Detailed information on CNT0000047 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0022930, E-value = 8e-07 (A. trichopoda)
CNT0031755, E-value = 1e-08 (O. sativa)

Expression of CNT0000047

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.4553.7324.0257.3451.2320.6191.4531.1369.1116.4766.8256.8547.4768.865.302leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.510

Peptides detected in this lncRNA

>peptide 1 (68 aa)
APKLKTSQGGHKPKVRTALFALKSPDRVFLFKLFFFFHVTVCDFMFMHTCVSTNLHSIFYSILQATMD*

>peptide 2 (43 aa)
MSQFVTSCSCILVSLQIYILYSILFCKQQWINMLLQYKYFHSY*

>peptide 3 (41 aa)
MGFNLRPQHNLTCMRTAYYVFDCLILRVRFLTSHSHHYEDL*

>peptide 4 (69 aa)
MRIYDEFKEIVKIQKFRRLVSYSGFYCFATLISYFYVNNTTRAGFSRADQFYASYPAVVQSCSWKLLRG*

>peptide 5 (33 aa)
MAKHFERQGKSPYAYHAQYMAHLLSHGQLDGSG*

Sequence

>CNT0000047
CGCCCCTAAACTTAAAACCAGCCAAGGAGGGCATAAGCCGAAAGTGCGGACTGCTCTGTTCGCTTTAAAATCACCTGATAGGGTATTTCTTTTCAAATTG
TTTTTCTTTTTTCATGTCACAGTTTGTGACTTCATGTTCATGCATACTTGTGTCTCTACAAATCTACATTCTATATTCTATTCTATTCTGCAAGCAACAA
TGGATTAACATGTTGCTGCAATACAAATATTTTCATTCTTATTGAGATTAAAGTGGGTCCCTCTAAATGGGCTTCAATCTCAGGCCCCAACATAATCTTA
CTTGCATGCGCACTGCATACTATGTGTTTGATTGTTTGATTTTGAGGGTAAGGTTTCTAACTTCTCATAGCCATCATTATGAGGATCTATGATGAATTTA
AAGAGATAGTGAAGATTCAGAAGTTCCGAAGATTGGTGTCGTACAGTGGGTTCTACTGCTTCGCTACGCTCATAAGCTACTTTTACGTCAACAACACGAC
TAGGGCTGGTTTCTCTAGAGCCGATCAATTCTACGCCTCCTACCCTGCTGTTGTACAAAGCTGCTCTTGGAAACTGCTTCGAGGCTGAAGAGTGGGGTCC
GTTTGAGTTCTGCGTCATGGCGAAGCACTTCGAGCGTCAAGGGAAGTCGCCATATGCATATCATGCGCAATATATGGCACACCTCCTTTCTCATGGACAG
CTTGATGGGAGTGGTTAACTTATAAACTGATGACAGTAGAAATTCTTGCAATATATGAAGACGTGTAAAGCCAAATGAGAAAACTTGAGGTTTGAGAACT
TGGTGAGATTGAACTTTCTATGTATTCTATAGCCTTACTTTTAACCTTTTAGGAATAAGGTACAAAATTTGTGGAGCATTTTGTCTGTTTTTTTGGTAGG
GTAGCAACAAATGCTCAGCTTTCTTCCTTCTCTTCTTTGATATTCAAATCCCAATCAGTCTCAAGTGCTTTTTATTATGTTGTTAAACAGTACATGCTAC
AATACGTACTGACACTATCCTACTTAAGATGATTGTAAGGAATGTTGGCATTTGAACTGATATTGTAAGCATGTGTTTGGTGCTGCGGCATGTTGAACTC
AACTCGATTAATTTTTCCCATATACATTGAAGCAACTTCTTCCCCTGGTC