Detailed information on CNT0000058 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000058

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3681.4271.011.7950000.121.0720.750.6990.6371.3192.2524.097leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIFVDVLIMLLKEKEMCCFKLVAMLIYHPNVLDY*

>peptide 2 (35 aa)
MGNIWSAVLHIFCFFDTFLLWRVHLQDKSGTPAWN*

>peptide 3 (106 aa)
LGSNPSSHTSTSFKPNDFFLRFYSCPMALPNFHRTSRKELFPNDKTLNPSLLCNDLDVNLHSSHSSLSLRVPLPVDHSVLSALDTSQTPPPDPLVSQPAF
IQGKLG*

>peptide 4 (46 aa)
WARIPAATLQLVLNQTIFSYAFIHAQWRFQIFTGQAEKSSSPTTKP*

>peptide 5 (93 aa)
MKLISQSQLRDYKQDPGGGRTRGWAIFGVLSCIFFVSSTLFCCGGFIYKTKVERQRGIDALPGMTILSACLETVSGVEQGYSRPEDINSAFGS*

>peptide 6 (32 aa)
MPNGASKFSPDKQKRALPQRQNPKPFSPMQRP*

>peptide 7 (42 aa)
MTAVASLSSLVQKPSSKIKAWKLDCLGLLAKGSFLQRCHHQC*

Sequence

>CNT0000058
CTGGGCTCGAATCCCAGCAGCCACACTTCAACTAGTTTTAAACCAAACGATTTTTTCTTACGCTTTTATTCATGCCCAATGGCGCTTCCAAATTTTCACC
GGACAAGCAGAAAAGAGCTCTTCCCCAACGACAAAACCCTAAACCCTTCTCTCCTATGCAACGACCTTGACGTCAACCTTCACTCCTCGCACTCCTCCCT
CTCCCTTAGGGTTCCGCTCCCCGTCGACCACTCCGTCCTCTCCGCCCTCGACACCTCCCAAACCCCGCCGCCGGATCCTCTCGTTTCGCAACCTGCTTTC
ATACAGGGCAAACTCGGGTAGTCCTGTCTATGACTGCAGTTGCTTCACTTTCTTCCCTGGTTCAAAAGCCTAGTTCAAAGATAAAGGCCTGGAAGTTGGA
TTGTCTGGGTCTGCTGGCGAAGGGAAGCTTCCTACAACGTTGTCACCATCAATGTTGATTGTTGATTGGAGATGTGAGGTGGCCCGTAATACCCCATATG
AAGTTAATATCACAATCCCAGTTGAGGGACTATAAACAGGATCCAGGGGGAGGTCGTACAAGAGGATGGGCAATATTTGGAGTGCTGTCTTGCATATTTT
TTGTTTCTTCGACACTTTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTC
TGCGTGCTTAGAGACAGTTAGTGGAGTTGAACAAGGCTACTCACGGCCAGAAGACATCAATAGTGCATTTGGCAGTTAAACCTCTATGGGAACGTCCTCC
TGGTCCTTCTCAAGGTGCTGCCTAGTGAGAAGATTTTTTTTTTAATCCATTTGAATCGAATTCAAGGATTTATAATAATTCATGCCCGATACTTAATCAA
TTGAATTAGATATTTTGCTTAGTGGGATCATGTTTGATTGTGGTTAATGATTTTTGTTGATGTGTTAATCATGTTGCTCAAAGAAAAAGAAATGTGTTGC
TTCAAATTAGTAGCAATGTTGATTTATCATCCAAATGTGCTTGATTATTGAACTTTGGATGTGGCTTTCAAGGCCGTAAGATTCAG