Detailed information on CNT0000075 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000075

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MDDPFACYIFSHASVLNLRFVNKYIHQVVTKAVKCLDCFLGLIRSTMKFFYV*

>peptide 2 (48 aa)
IPFISRCLCYLSSCSADLWVFVGLEVLRSQFPLDTTSIFTLFAPFRTR*

>peptide 3 (34 aa)
MPTITGISGARYKDVSNLNQNILRSEKKTLLSLF*

Sequence

>CNT0000075
ATTCCCTTCATTTCACGGTGCCTATGTTACTTATCCTCATGTTCTGCTGACTTGTGGGTCTTCGTGGGATTAGAGGTTCTTAGATCCCAATTTCCACTTG
ACACCACTTCGATTTTCACTTTGTTTGCACCATTCCGGACGCGTTAAGTGGGCATAGCAAGAGTCAATAAACATTCCTTTAGATGGAGAATCTCCTACCT
CACTCAATGCCCTTTCGAATTCACTCTTGAAGCCTGAAAATCACAAAGCTATATTTTCACTCCAACGGCATAGAAGTGGTGAAAAATATTGTTGTTTTGA
GCTCTACTAGAAGCTCTTACTCAAATGGATGACCCTTTTGCATGTTATATTTTCTCTCATGCCAGTGTTTTAAATTTAAGGTTTGTGAACAAATACATAC
ATCAAGTGGTGACTAAGGCAGTAAAATGTTTAGACTGTTTTCTAGGATTGATTAGAAGCACAATGAAATTCTTTTATGTTTAGCAAAATTCGATCATACA
CAAGCTATTAAGATCAGAAAGTGTTCACCTTGAATTTTACTTAGTTGATCAGTTGAGCAGTTGCTTATATTAATCTTGCAGCTATGCCAACTATTACTGG
GATCAGCGGAGCCAGGTATAAAGATGTTTCGAATCTGAATCAAAATATCTTGAGATCAGAAAAAAAGACTTTACTAAGCTTATTTTAAGTTGGCAAATAT
GACTACGCTTTATTCAGGAAGTGAGTTTTGCTCAAGGATGAGGAGGTTTGATAAACCATATTTTGCATGTGTTAGGAGGTGAGTTTTACTCCCATTTTGT
TTATGTTTATCCATATTTTATTATGCCATGTGTGTAACAAGAAGGTCCC

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA16G08230.1 Uncharacterized protein protein coding CNT0000075 1059 580 CDS Trans
GLYMA16G08230.2 Uncharacterized protein protein coding CNT0000075 1059 580 CDS Trans
GLYMA16G08230.3 Uncharacterized protein protein coding CNT0000075 1059 580 CDS Trans
GLYMA16G08240.1 Uncharacterized protein protein coding CNT0000075 1542 572 CDS Cis
GLYMA16G17120.1 Uncharacterized protein protein coding CNT0000075 1010 578 CDS Trans
GLYMA16G17120.2 Uncharacterized protein protein coding CNT0000075 1010 578 CDS_UTR Trans
GLYMA16G17150.1 Uncharacterized protein protein coding CNT0000075 491 293 CDS Trans