Detailed information on CNT0000081 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q52QU2|AIL6_ARATH, E-value = 4e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0044990, E-value = 2e-07 (A. thaliana)

Expression of CNT0000081

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VTPLYTDAPLENPLLFLPKGNKKDNSFYVE*

>peptide 2 (86 aa)
LSHLYTQMPLLKIHCSSCPRETKRTIPSMLNEIYGGGKREFTITCKKFNRTFLNWRQILAWSCASSLQVPSHKCLTEHLRSRRHVE*

>peptide 3 (34 aa)
MFFSPCLPFLVCPSFLQLLSHKWASYLPVHLCLTK

Sequence

>CNT0000081
TTGTCACACCTCTATACACAGATGCCCCTCTTGAAAATCCACTGCTCTTCCTGCCCAAGGGAAACAAAAAGGACAATTCCTTCTATGTTGAATGAAATAT
ATGGCGGGGGAAAGAGAGAATTTACTATCACATGTAAAAAATTTAATCGTACCTTCTTAAATTGGCGACAAATTCTTGCCTGGTCATGTGCTTCATCTCT
TCAAGTTCCTTCTCATAAGTGCTTAACTGAGCATTTAAGAAGCCGTAGACATGTAGAGTGATTACAGTTACTATGTAATAGTTCGAGCCACATAAATTAA
ATACATTAGGAAATATTTGACTTTTCTAAATAATTTAAACCAATTCAATTGTTTCTATTTTAATACTACTGTTGCAAGACTAAGAGCTAAGGTAAGACTT
TTGCAAAGGAGAAAACTGTACAAGTTTCAGAAAACCTTACAGGGAAATTTATGTGAGTTGTTGGACCCCAATACTTGAGTGCAGCTAAGTCGTAAGCCTT
TGCTGCTTTTTCTTCCTTATCATAACCACCTAATAATAATAATAATAATAATACAACACAAATTTAATTATTTGCCAAAAGCGATAAAATTATCCTCAGA
AGCCAAAGCACACTTTCCAATGCTTCAAATAGCGTATCTAACCAGTAACCGTGTTATATAGTAAAGGAAAGAGATTTACAAAGATGGTAAAGGAGTAAAG
AGAGACAACTAATGCGTGCGAAGGAGTGTAACTCACCAAGGTAAACTGTGTAGATTTGAAGAATCCAACCAGTGCATGAAAAAGATCGTTAGTATATTCT
CTTTCAAAACAAGAGGAAAGTAAAAAATGGAATAAAAATGGAAAAAGGTTAAAGGACTTGTTTTGGTTCTTTGAAAATGGTCTTCCTTTGGTCAATGACA
ATAAACCAAAAAGAATAGTATAAAATAAAAAGAAACCAAAAAGCATGTTTTTCTCACCTTGCCTTCCTTTCCTTGTTTGCCCTTCCTTTCTGCAACTATT
ATCCCACAAATGGGCCTCATATCTTCCAGTCCATCTATGCCTAACAAAAT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G04265.1 Uncharacterized protein protein coding CNT0000081 516 290 CDS Trans
GLYMA07G04265.1 Uncharacterized protein protein coding CNT0000081 1289 781 CDS Trans
GLYMA08G40831.1 Uncharacterized protein protein coding CNT0000081 86 72 CDS Trans
GLYMA16G00950.2 Uncharacterized protein protein coding CNT0000081 2826 1050 CDS Cis