Detailed information on CNT0000089 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P42066|PCKA_CUCSA, E-value = 9e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000089

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.9170.19200.8453.2973.2643.0043.582.7051.7590leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.754

Peptides detected in this lncRNA

>peptide 1 (43 aa)
CCHTRLNASLMGMLLIRDAEWLAIVCFEIEEVGFIELCCLASS*

>peptide 2 (33 aa)
MKLLLLIKKLSFDTFHLWFSQFQSSTRSSSALL*

Sequence

>CNT0000089
TGCTGCCACACAAGGTTAAATGCCTCATTGATGGGAATGCTATTAATAAGAGATGCAGAATGGCTAGCCATTGTTTGTTTTGAAATTGAGGAAGTTGGAT
TCATAGAGCTTTGTTGCCTAGCTTCTAGTTGATGAAATTGTTGCTACTAATAAAAAAATTAAGCTTTGATACATTCCATTTGTGGTTTTCCCAATTCCAA
AGTAGTACAAGGTCATCGTCAGCCCTTTTATAGTGCATCCCTGGCATCACTGACTAGAGAAATAGGACCAAAACTGGTGAAGGGAGACCCAACTCGAAAG
TCAGATACCCAGAAGGTTACTCACGTTCACCACCATCATGTCAGTACTCCCACCATTGCTGTCAGCGACAGTGCTTTGAAATTTACCCGTGTCCTCGACA
ATCTCTCCCTAGCTGAGTAATGCGCCTTATGTAAAACGCTCAAGCTATTAGACAACAGCTAGTTGGGATCTCTTAACGGATCAAAGCTCTGAAGTCTATA
TAAAGCTTGAAGATGTTCATTATAAAGTTGTCGAATCACTAGAGAATCATTTGAGTCAAAACGAACAAAGTGTTATAACGCTGTCAATTTAGTTGGATGA
AAGAAACTTGAGCGAATTGAGTGAACTTTAGCTTTACTAAGATAACAAGTTTCATTGTATTCAAACTTATTGTGTAAACAATCTTTGAGTGATTAGAATA
CATTTTCAATCAAACATCTATTGTTTGTGAAATCCAGGAGTGGCTTAGTGAAAAAAAAATATTTGGGTCTTAATCTCAGGGGGAGATTAAGGGTAATGCC
AGGAGTGGCCCAGAGAGTACTTGTTGTAATCAGAAGTGGCATAGAGAATACTTGGTTGTAATCAAAGATTTGTTTAGTGAAACCCTTCAAGTTTTGAAGG
AAAATTGGACGTAGCACAAGAGTTGGG