Detailed information on CNT0000090 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000090

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKVDIETLMKLEHYLHLQLPLLAFFSSTRRPKKQYSSV*

>peptide 2 (36 aa)
PILVLCPIILSTLAGSVNRAPMFFSSSPNHFDVNEG*

>peptide 3 (31 aa)
SYSSPLSNHTINLSRQCEQSSNVLFILSKPF*

Sequence

>CNT0000090
TCCTATTCTAGTCCTCTGTCCAATCATACTATCAACCTTAGCAGGCAGTGTGAACAGAGCTCCAATGTTCTTTTCATCCTCTCCAAACCATTTTGATGTG
AATGAAGGTTGACATTGAGACATTAATGAAACTTGAACACTATCTTCATTTGCAATTGCCTTTGCTAGCTTTTTTTTCCAGTACCAGGAGGCCCAAAAAG
CAATATAGCTCTGTTTGAATTTGGGTCGCTGATTTATTGATCACCATTTATATGCTCAGAATCAACTATGTTTAAGTAGACAAGAAGCATAGAAAAGTGC
AAACGACATTTGTTCCATCATCTAAAAGAGGGAGACGCTCTAAT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA16G29141.1 Uncharacterized protein protein coding CNT0000090 290 118 CDS Trans