Detailed information on CNT0000103 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 9e-53

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0008422 in S. tuberosum

Most similar lncRNAs:
CNT0044312, E-value = 7e-31 (A. thaliana)
CNT0022942, E-value = 1e-23 (A. trichopoda)
CNT0008422, E-value = 9e-43 (S. tuberosum)
CNT0035627, E-value = 1e-07 (C. reinhardtii)

Expression of CNT0000103

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)9.7798.75218.50318.095683.26571.405211.2343.0312.9471.7680.4810.8750.6053.6111.877leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)050100150200250300350400450500550600650700750

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MENMANLPFLSSFTFNSAKASGSSARPNGSKLPPG*

>peptide 2 (78 aa)
MGQSCHLDRLGQSPHQEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK*

Sequence

>CNT0000103
AGGCACACATCCAATATATATTTCATTAAATAACAACATGAAATTCACACTCAAGTCATAGTTTCTCATCGTTTCAGGTTTTTTTTTTTTCCCTCACTTT
CCGGGGACAAAGTTTGTGGCATAGGCCCAAGCATTGTTGTTCACTGGGTCAGCAAGGTGATCAGCAAGGTTTTCTAAGGGTCCCTTTCCTGTCACAATTG
CCTGAACAAAGAAACCAAACATGGAGAACATGGCCAACCTACCATTCTTGAGCTCTTTCACCTTCAACTCAGCAAAAGCCTCTGGGTCATCAGCAAGGCC
CAATGGGTCAAAGCTGCCACCTGGATAGATTGGGTCAGTCACCTCACCAAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAGCTCAAGAATGGTAGGTTGGC
CATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCAATTGTGACAGGAAAGGGACCCTTGGAAAACCTTGCTGATCACCTTGCTGACCCAGTCAACAACAAT
GCTTGGGCTTATGCCACAAACTTTGTTCCCGGAAAGTGAAATGACTTGTGAATTTTATGTTATTTAGTTAAATATGTATTGGATCTATCAAGTGAGAATG
TGAATTATATTATTATATTTTATATATCTCTTTTTAGTTCATTTGGATGTATCTCCAAGGTTCTAAGTTTATATATATATGCACTTTATTAACCAAACTA
ATTAAAGCTCAAATGACAAGTCTTAAACATTAGAAGCGAGTTAGGTTCTAAAATTTAAAGCAGTGGGATGAAGAAGGAGAAGTAGAAATC