Detailed information on CNT0000112 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000112

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MFQFHFFGLSPVLSLFQSKWKLIHLTHYITGDGEGGIEMTESMQLIREFCDRFISSEKATRTRII*

>peptide 2 (79 aa)
MKAQVHLKNYKKRVKPRRNNTRSLRALSYIPKPKNSSLGNSLISLSSFFLFPSSIPSPPPILIPPFQCKVFNDHERLNP*

Sequence

>CNT0000112
ATAAAAACAGAAAGTTTCAACATTATTGGGATTATAAACAAAAGAAAGAAAATTACAAAGATTAAAAGTGAAAACAAGTAGTATATTTACAAGAATGGAA
AAGGTATTTAAACCACCCTAAACAATATAAGAAAAAATGGTTGGACTTATAGTTGTGTATCATGTACACTCAGACACATGCTAATTGAACACTAAGATTG
GGGTCTTTGTTATTGAATCAACCAACAGGCCAGAGTAGCTGCAGATTTGGCTATAAAGGATAACAGACAGCTAATGGTGAGTAACATATGATAGTAGTTT
TATTAGGAATTAGGAATCCATAACTAAAGTTGCACACACTAAAGTGAGGAGCTAATCTATTATAGAGCCTGTAATGAAACCATCTTAACCTGGACCATTT
GGCAGCACAGAAACAGAATCATCTTTTCAAATGATTCTTTCAATGGAAGCAAGTTGTTGGAAGATGCAGTGTTCCTAGTATGGTCATGGCTTAGAGCAAG
GGAGACAGATTTTGTAATGCACCACAACCAATGGTCTAGTAATCTAAATGTAGGTTTTGGTAAATAGGACAGCTCATTAGTTGATGGATTGTATATTGGT
ACATATGGTAACTAGCTTGGATCCTATAAGGTCGAAATCCCTACTGGATCCAGTAGGTTTCCTATAAACCTATTCTGTAACATTAGTACCTCTGGTACTC
CCATTTATATATATATAATACTTTTGCTGATAAAAAAAAAAACAGGAGATTGAGTTTCCCACAGCTGGACTCGGGTCTGTGCCAGGTTCTACATGTTTCA
GTTTCATTTTTTTGGTTTGAGCCCTGTTTTATCATTGTTTCAATCTAAATGGAAATTGATTCATCTCACTCATTACATCACAGGTGATGGGGAAGGTGGA
ATTGAAATGACTGAGAGCATGCAATTGATTCGTGAATTTTGTGACCGCTTCATTAGTTCAGAGAAAGCCACACGAACAAGAATAATATAAAAATTGGAGG
GACTAAAAGCAAAAAGCTACAAGAATTATGAAGAAAAATTGAGGATTCAACATCAGGTCCAGTCCAAAGGCGTGCTTAGCGCGCAAACTAGCACTGGCGC
TAAGCGCGAAAACATGCATCTGCGCTGATCAAGCAGAGCACGCTAAGCACGAGTATGAAGGCCCAAGTCCACTTAAAAAATTATAAAAAGAGAGTCAAGC
CAAGAAGAAACAACACACGAAGTCTCAGAGCACTCTCATACATACCAAAGCCTAAGAACTCTTCCTTAGGGAATTCTCTTATCTCTCTCTCATCATTTTT
TCTATTCCCTTCTTCCATCCCTTCTCCTCCACCAATTCTTATACCCCCATTTCAGTGTAAGGTCTTCAATGACCATGAGAGGCTAAACCCCTAGTTATGT
CCTGGCAGGCCTAAAAAGCCAAAGAGATGTATGATGTACTTCATATTTATCAATGCAACAGGTGTTTTCTATCCTAT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G13106.1 Uncharacterized protein protein coding CNT0000112 99 161 CDS Trans
GLYMA07G19021.1 Uncharacterized protein protein coding CNT0000112 131 100 CDS Trans