Detailed information on CNT0000117 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LE94|RING3_ARATH, E-value = 3e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000117

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.9564.9483.4345.0884.21612.6818.9436.755.5846.474.1644.5484.4887.3413.355leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011121314

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MKTNCLIAGLKIVQIHFQFLEHLKALVLMDPFIVCTICEKKNEKVLTECYTTLHVSECNFSCQNSPIIKVKE*

>peptide 2 (36 aa)
MVEVGCCRRVSKSYYTFYYSGFSSCLSVHMCMDSLA*

>peptide 3 (44 aa)
MASPPSPPPCRFAALSPFSCTNFSIFICFSMLFSERKKKCILVL*

>peptide 4 (66 aa)
MHKVWWRLILFRSHITKENDNITGRFDYLTEKDCWKMGGCCCSARKPHLHGTPVYYYNMMLRILKL*

>peptide 5 (57 aa)
MSELTYYQSERVKLFSRRNSCSQNGFPSFPTPMSLCCSLSIFLYKFLNIYLFFYVIF*

>peptide 6 (37 aa)
MYISWWMLLGIPSFVVYTGPLCFKLKSLLLGGKKGLL*

>peptide 7 (40 aa)
MHTGLVNQVCFTFCHIFNVYIVVDVVGDPFFCCIHWTPLF*

>peptide 8 (84 aa)
MFPEWLPLLPHPHVALLLSLHFLVQISQYLFVFLCYFLRGKKNAYWSCKSSLLYILPHFQCIYRGGCCWGSLLLLYTLDPFVLN*

Sequence

>CNT0000117
GTTCCTTATGACACCGAAACGAGTGGAGCGCGTAACACCGTGCACAACCCCACCAACACAATAACACAGTAACATCAAAAGTACTGTGTAACTACCAACC
TTAACCTATGTACACATAATCGAACTTCTTAATTTCACAACCTCCCCTCCCTCTCTCCCTTTTCGTGGAACCCATTTCCCATTTTCCCCTTTCCAAAAGA
ATGAATGCATAAAGTTTGGTGGCGACTGATCCTTTTTCGATCCCACATAACCAAAGAGAATGACAATATCACTGGTAGGTTTGATTATTTAACAGAAAAG
GACTGCTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACACCAGTGTATTACTATAATATGATGTTGAGAATCCTAAAAC
TCTGACAAAATGTGAACACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGCAATCAGGAGATGATATTTGAC
CAGACATTGAACTAGTTCTGTTGTTTAAAAAAGAAGAGCTTGCTAAATGCGTGAAAGATAGATGAAAACTAATTGTTTGATAGCTGGTTTGAAGATAGTA
CAAATTCATTTTCAATTCCTAGAGCATTTAAAAGCTCTTGTTTTAATGGACCCATTCATTGTGTGTACAATATGTGAGAAGAAGAATGAGAAGGTTTTGA
CAGAATGCTACACCACATTACATGTCTCTGAGTGCAATTTCTCATGTCAGAACTCACCTATTATCAAAGTGAAAGAGTGAAGCTTTTCTCAAGAAGAAAC
TCATGTTCCCAGAATGGCTTCCCCTCCTTCCCCACCCCCATGTCGCTTTGCTGCTCTCTCTCCATTTTCTTGTACAAATTTCTCAATATTTATTTGTTTT
TCTATGTTATTTTCTGAGAGGAAAAAAAAATGCATACTGGTCTTGTAAATCAAGTCTGCTTTACATTTTGCCACATTTTCAATGTATATATCGTGGTGGA
TGTTGTTGGGGATCCCTTCTTTTGTTGTATACACTGGACCCCTTTGTTTTAAATTGAAATCTCTTCTGCTTGGTGGCAAAAAGGGGTTATTGTGAACATT
GTTAATCAGTGTAGATTCTGCTGGTTTTGCTGTTTGACAGTGATCTCAAAATTTGTTGTTTTCCTATGGTGGAAGTTGGATGCTGTAGAAGAGTAAGCAA
GAGCTATTACACATTCTACTATTCTGGTTTTTCCAGTTGTCTTTCTGTGCACATGTGTATGGATAGTTTGGCTTAGT