Detailed information on CNT0000119 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000119

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.34800.071000.9390.490.5360000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.951

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVRGNIVWHLVLVDIILRTKEVKKALNSPRKGRSI*

>peptide 2 (46 aa)
KAYFSLRYYTTFQITWRLQGPLASYSIILYILIKTSSIIGTVMRLI*

>peptide 3 (32 aa)
MKNFLLLTKICFFDGQRKYCMASGFGRYHFKN*

>peptide 4 (35 aa)
GILFFKILHHLPNNMETSGAVSFLQYYPLHFDQDK*

Sequence

>CNT0000119
AAGGCATACTTTTCTTTAAGATACTACACCACCTTCCAAATAACATGGAGACTTCAGGGGCCGTTAGCTTCTTACAGTATTATCCTTTACATTTTGATCA
AGACAAGTAGCATCATTGGAACAGTCATGAGGTTGATCTGAGCAGTGACTTTCAGGATTGGACTGGGAGGAGGTACTTGTGGGAAAGGGAGAACTCTCAT
TCTGGCAGACTGGTTTTGGACTCAACATGGGGTGAATGCCAGATTGTGCATAGAAAACAGAAGTAAAAACATGACCATGTCCCTCAGACTTAAGCTTGGA
GATAACTCCTGAAACAGATAATTTAAGGCATTCATGAGAATCCCAATTGAGCCAGTTTACTTTAGGAGATGTAATCGATGGTGGTGAAAAAAGAGGCTGC
AACAATTTACTATTACTGTACCTGCATATAGAAATTATTACCCATCGTCAGAAAATCTGTGTAATCACAATGATGTTGAGTTTTTGAATGGGTCAATAGG
AAAAAAAAATACTTTAGAATGAAATACTGGATAGTGATTTCTCATCATCCAAGGATGAAAGCTTAAACATGGCCTTTATTTTTGGGTGGTAGGGAGAGGG
GGAACCATAAGAGTGCAGAAATTTAATGTTTAAATAAAAAAAGGGCCAAACCAGTGTATAGTTTTACATAGAGATGATTTGATCCATAAACTTAAAGGAA
ACAGTCCCAAATGGTTATTAACAAAGTCTCTTTGAAGAATTCTTCTTATTGTTGATAACTGTGCACAAAAACACCCATGTATCTGTGGTCTTCAATATTT
TAGATTTTAGAAGCATAACTATATTTACCATTATTAGGATTATTGGATCCTTCCATAGATTATAGGCTCTGAAAAATATGTTTCAGTACAAATCACCATT
TATTCAGCTTTCATCAATACTAATCCTACATATAGAACAACATAAACAAGACTGACGAAAGACATGAAAAGCACATGTTAAAATTCAAATAACAAAATTC
CATGAAGAACTTCCTTCTGCTGACTAAAATTTGTTTCTTTGATGGTCAGAGGAAATATTGTATGGCATCTGGTTTTGGTAGATATCATTTTAAGAACTAA
AGAAGTCAAGAAAGCACTGAACTCACCAAGAAAAGGCAGAAGTATTTGAATGGTTCAATCTTTGAGATTCCTCAGTTGATTCACTTGCTTGTTTACCTGA
GCTGCCAGGAAAATCACTTCTTAAGGAAAGTTCCAATTGCGTTTCACAATCAAACTTGGTTGTATTACCACCATTGAGACTACAGTTTTCATTAGGGTGC
TTTGGAAGATTTCCAAATGTGGCAATCAAGTCAATAGCTCCTTTAGAAGGTTTCACCTGCTCAGCATTGCATCCATGCAATATAGAAACATGAGAATTGT
CTCTGCCTAACTCAGATTTTAAGATTTCATCCTCGTTTTCAGTTTCAGGTTCAGCAACACCACAGTCTTGTTCTAGCATTAAATCTGTCAATTCAAAACT
TTTGTCACACCTTGCAGCCTCTGATACAATTGTAATTGATTTATCTGCATTAAATGTTTTTAATAGACGACAAAACAGTCAGCACATTGAAACAAGATAA
AAACAAATTCTAATCAAAGTGTAAAACAAAATTCGCCTACCCTCTGTTTCATCATTATGCTTAGCTGATTTCCTTTCAAATTTGGCAAACTTTTCATGGT
CCACCA

lncRNA-RNA interactions

Number of interactions: 14

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G05530.2 Uncharacterized protein protein coding CNT0000119 1847 830 CDS Trans
GLYMA07G05530.2 Uncharacterized protein protein coding CNT0000119 563 347 CDS Trans
GLYMA07G05530.3 Uncharacterized protein protein coding CNT0000119 1847 830 CDS Trans
GLYMA07G05530.3 Uncharacterized protein protein coding CNT0000119 563 347 CDS Trans
GLYMA07G05530.4 Uncharacterized protein protein coding CNT0000119 1847 830 CDS Trans
GLYMA07G05530.4 Uncharacterized protein protein coding CNT0000119 563 347 CDS Trans
GLYMA16G02050.2 Uncharacterized protein protein coding CNT0000119 2238 830 CDS Cis
GLYMA16G02050.2 Uncharacterized protein protein coding CNT0000119 960 357 CDS Cis
GLYMA19G44970.1 Uncharacterized protein protein coding CNT0000119 146 138 CDS Trans
GLYMA19G44970.2 Uncharacterized protein protein coding CNT0000119 146 138 CDS Trans
GLYMA19G44970.3 Uncharacterized protein protein coding CNT0000119 146 138 CDS Trans
GLYMA19G44970.4 Uncharacterized protein protein coding CNT0000119 146 138 CDS Trans
GLYMA19G44970.5 Uncharacterized protein protein coding CNT0000119 146 138 CDS Trans
GLYMA19G44970.6 Uncharacterized protein protein coding CNT0000119 146 138 CDS Trans