Detailed information on CNT0000125 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8L6J4|RPO1A_TOBAC, E-value = 6e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000125

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.767.3535.5437.2270.57300.1410.5285.5915.066.1445.5935.43311.1276.331leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLQSALQSSQNQVCWQDLLFCCFYTLYFISFFLGRD*

>peptide 2 (31 aa)
MKERGPPHMVLLSKQEVYSAGNLFYFMVDVT*

>peptide 3 (31 aa)
MLMKAFNVFCNYVKYLWFIVYHLTYLSTRPN*

Sequence

>CNT0000125
GATTGTATTCATGTTGAACTGACTGAATGCTTATGAAAGCTTTTAATGTATTTTGTAATTATGTCAAGTATTTATGGTTTATCGTGTATCATCTAACCTA
TCTTTCTACCAGACCAAATTAATCAACGTAGCAGCCTCATAATTTTTTGTTGTTGGAGAGCTTCCAAAAGACTTTTCCCGCATTGAACTTTCCTCCCTTA
CCTGAACGAGGAGACTTTGATCTTCAGGAGGTTTTGGGGTCTGCCTATTTTTTTAACTAGATTCTCAGAAACTCAGGTTACTTAATCTTGTTCTATCTTC
TCCTGTGGTCCTGTGGAGATAAAGTCCAATAGCATGGAATTTGTATATATACATGTATATCTACATGCATGGGATTGTGAAAGCCCCAACCATGGAGAAG
AAAGAAGTGTGTGAAGCAAGAACTGGGTTGCCAAATTAGTACCTTCAGGAATCTTGTACTTCTTTTCTACGCCTGTTTTAAACAGGCATATTTCCTTGAA
GAGATGTCCCATAGTTGGTACTCCAGTTGTCTTCCAAATCCACTATTTTATAGAGGATACAAGGAATGAGGTGATCTAACTTGGATTTGTCATGAAAGAA
AGAGGGCCTCCACATATGGTTTTACTGTCAAAGCAAGAAGTGTATAGTGCAGGCAATCTGTTTTATTTCATGGTTGATGTAACATAGACTAATTAAGGAT
TGGAGCACTGGTAATCATTTCTGGTGATTTCTCAGATCTGGATGCTTCAGTCCGCTTTGCAAAGCAGCCAAAATCAAGTTTGTTGGCAAGATCTTTTGTT
TTGCTGCTTTTATACATTGTATTTTATTTCATTCTTTTTGGGAAGGGATTAAGAGCATGTGTAACACTTATGTCATTGTTACTGTCATACTTGTTCTTAC
ACTGCTTTTTCCATTATTTGAATTGAATATAGTCAAATAAATAAATATCAAAGGAAAAAACACATTTTACTTGCGGTTTCCAATTGTAC