Detailed information on CNT0000132 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000132

Peptides detected in this lncRNA

>peptide 1 (89 aa)
AQYPLLPNAVKSLSACLNVHHFPVTHLHLHHNTHTRSSIYLPHTRLAQKQKSSHPARTDNPPPKSPPRASSNLSSHWIGAVRCEREKNS*

>peptide 2 (59 aa)
GTVSAASQRCKIPFCMPQRAPLSRYTPSPAPQHTHALVNLPSSHAPCTKTKILTSSENR*

Sequence

>CNT0000132
TGGCACAGTATCCGCTGCTTCCCAACGCTGTAAAATCCCTTTCTGCATGCCTCAACGTGCACCACTTTCCCGTTACACACCTTCACCTGCACCACAACAC
ACACACGCGCTCGTCAATTTACCTTCCTCACACGCGCCTTGCACAAAAACAAAAATCCTCACATCCAGCGAGAACAGATAATCCTCCTCCAAAATCTCCT
CCACGCGCCTCCTCGAACCTCTCTTCACATTGGATTGGTGCAGTGAGGTGTGAGAGAGAGAAAAACTCGTAGAAGTTCTCCAGCTTAGGGCACGAGTGGC
TTATCTCGCCTTCAATGTCCAC

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G06165.1 Uncharacterized protein protein coding CNT0000132 450 247 CDS Trans
GLYMA07G06165.2 Uncharacterized protein protein coding CNT0000132 450 247 CDS Trans
GLYMA07G06165.3 Uncharacterized protein protein coding CNT0000132 450 247 CDS Trans
GLYMA16G02770.2 Uncharacterized protein protein coding CNT0000132 697 231 CDS Cis
GLYMA16G02770.3 Uncharacterized protein protein coding CNT0000132 697 231 CDS Cis
GLYMA16G02770.4 Uncharacterized protein protein coding CNT0000132 697 231 CDS Cis
GLYMA16G02770.5 Uncharacterized protein protein coding CNT0000132 697 231 CDS Cis