Detailed information on CNT0000133 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P10978|POLX_TOBAC, E-value = 4e-28

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000133

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MREIFFCIITSENLDCFFKLIFNLIAKQLK

Sequence

>CNT0000133
GGGGGCGGCACCACCTTTCCTTCCCTCCCGATTGCCCTAGGTAAAAAATGTATATAGTTCTTTTCTTTTGCATCAATTCAGCGGCGACGAAACCGCAATA
GATCTCCGTTTCTCGCCAAACAAACACAAAATAGCTGCCTTCAGCGGCGACGAAACCGCACCTTTCTTTGGCTTCCTCGGAGCCACCGCTACCCTCGTTT
TTTCCTGTAACTAACTCATCAAGGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGACTGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGA
TGAGGAGGTTTTGCGGAAGTTGGGACAAACCATGGGAGTTTCCTTAATAAACGTGTAAAGGGATTAGAAGTAGTAAAGTTGCAGGAAAAATGGTGTGAGG
ATAAAGAGAAAACAAAGGAAGAATATGAAGGAGACAAGCGATGGTAACTCAAAAAATTATAAATAGGATGAGGGTTGCGAGTGGATCGAGTACCTTTTCG
GATGGCAATGGGCCAGTCTGACTAAGAGTGATGAGAGACAGGTGAGGAAGCAGGATCCATGGTTGGAGGACTAGTTGGAGAAGGATGAGAATCACGAGGG
GAGGCTTCAGGTACTGTAGAATTAGCTGGCCGTGTCCTGTGATGATATGTAAGTAGAGGTAGAGAGACAACTTCAATTGAATTTGGTAGAGAAGATGAGA
CTTCATTGACATTTTGGTCGGAGTTACCTAGAGGACAAGGAATTGGCAGTACTTCCTGGAGAGAAGAAGAATGATCTACAGAGGATGAGAAGAAAGGTGT
GTCTTCAAAGAAGGTTACATCTGCAGACATATAATATCGTCTTGTGATTGGAGAGTAGCATTTGTAACCCTTTTGAAGACGAGAATAACCCAAAAAGACA
CATTTTACTGACTTAGCTGAAAGTTTGTCTAAATCAAGGGAAAGATCATGAACAAAACAAGTACAACCAAACACTCTAGGAGAGACATGAAACAATGGGT
CATGAGGAAAGATAATTGAGTGAGGAATTTGGTTTTCAAGAGAAGAAAAAGGCATCCTATTAATTAAGAAGCACGCAGTAAGCACTGCGTCTCCCCAATG
ATGTGTGGGAACATTAGAATTTAACATTAGGGAATGAGCAGTTTCAAGAAGGTGACGATTTTTCCTTTCAGCTATGCCATTTTGTTGAGGTGTATGAGGA
CATGTGGACTAGTGTAGGATACCTTTTGAGGATAAAAAAAAGGAAAGATCATGAGAGAAATATTTTTTTGCATTATCACTTCTGAAAATCTTGATTGTTT
TTTCAAATTGATTTTCAATCTCATTGCAAAACAACTTAAAT

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G10850.3 Uncharacterized protein protein coding CNT0000133 290 277 CDS_UTR Trans
GLYMA12G16433.1 Uncharacterized protein protein coding CNT0000133 114 107 UTR5 Trans
GLYMA12G16433.1 Uncharacterized protein protein coding CNT0000133 133 247 UTR5 Trans
GLYMA12G16433.2 Uncharacterized protein protein coding CNT0000133 114 107 UTR5 Trans
GLYMA12G16433.3 Uncharacterized protein protein coding CNT0000133 114 107 UTR5 Trans
GLYMA12G16433.3 Uncharacterized protein protein coding CNT0000133 133 247 UTR5 Trans
GLYMA12G16433.4 Uncharacterized protein protein coding CNT0000133 114 107 UTR5 Trans
GLYMA12G16433.4 Uncharacterized protein protein coding CNT0000133 133 247 UTR5 Trans
GLYMA12G16433.5 Uncharacterized protein protein coding CNT0000133 114 107 UTR5 Trans
GLYMA13G07691.5 Uncharacterized protein protein coding CNT0000133 148 89 CDS Trans