Detailed information on CNT0000134 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VZH2|APM1_ARATH, E-value = 4e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000134

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.3733.1121.244000.20200.1480000.1570.27100leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MYSSKFIFLISNCCISENGKSIQWTNSSLL*

>peptide 2 (31 aa)
MDLKCKARALSARLDQTISSQEMIALTKVTF*

>peptide 3 (33 aa)
ISVTFYLDGHVFVLLLSRLHFQIMIIEKARARS*

>peptide 4 (57 aa)
MEQKQQSIDQFKGNTRLPSFAIPERYELHLIPDLSARTFSGTMQISLTINESTSFLV*

Sequence

>CNT0000134
TATCTCTGTCACTTTCTACTTAGATGGTCATGTTTTTGTTTTACTTTTAAGTAGACTTCACTTTCAAATTATGATAATTGAGAAAGCAAGAGCAAGATCA
TAGGAGGAAAATGGAGCAGAAGCAGCAGAGCATAGACCAATTCAAAGGCAATACAAGGTTACCCAGTTTTGCTATTCCAGAAAGATATGAACTTCATTTA
ATACCTGATCTCTCTGCACGTACTTTTTCTGGCACCATGCAAATTAGTCTTACGATCAATGAAAGCACCAGCTTTCTTGTCTGAAACTCCGAGGAACTAG
TCATCCAAAACACTCACTTCACTAACTCTCAAGGACAGGATAATTGGGAAAGAATATTGGTCAAATATGGTGCTGGACTTTTACTTACCAATTTCATAAG
CCAAATAGTCCCACTGGTTAATAGTGATGAGAAAGCAGATGAGATAGAAGCATTTTTTGCCAGTCACATGAACCATTCCATCGTTATGCATTTGAAGTTA
AGCATTGAACGTATCCGTATCAAAGCAAGATGGATTTGAAGTGTAAGGCAAGAGCACTCTCTGCAAGACTTGATCAAACAATTAGCTCACAGGAAATGAT
AGCTTTGACAAAAGTTACCTTTTAAGCAAATCTATTAACATAGACCGTTTCCACTAGGCTGTCTATACCTCTGCCTCTTGTGCATTCCTAATATCTTGCT
ATATTTGAGTAAATACCAGTTTGAGAATAGTTGGGTCAGTCCAAAATAGTTAACCAAGCTGTCATGTATTCCTCAAAGTTTATCTTCCTTATTAGTAATT
GTTGTATTAGTGAAAATGGCAAGTCTATTCAGTGGACAAATTCTAGTTTATTGTAGTAATTTGCAGCAAATGCCTAGTTTA