Detailed information on CNT0000141 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SAR5|AKR2_ARATH, E-value = 3e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000141

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.8024.4074.7346.1592.4172.533.32.2286.2077.066.487.4715.5466.1817.341leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MMPCCHQQSKGKLRGRRHDFVIYLLVSSNRFSFWIKCNLLFARCFRDENLRADRQLEFTQLDMEMTFTPYEDMLTLNEELIRKVRLHYL*

Sequence

>CNT0000141
AATTTGTGTTAGTAGGTAAAATAAGAGAAGGGGTGAGGGGGCGGCACCACCTTTCCTTCCCTCCCGATTGCCCTAGGTAAAAAATGTATATAGTTCTTTT
CTTTTGCATCAATTCAGCGGCGACGAAACCGCAATAGATCTCCGTTTCTCGCCAAACAAACACAAAATAGCTGCCTTCAGCGGCGACGAAACCGCACCTT
TCTTTGGCTTCCTCGGAGCCACCGCTACCCTCGTTTTTTCCTGTAACTAACTCATCAAGGAGGATCCATCTCTGAAACATATTTTGGAGGAGATAGAGAC
TGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGATGAGGAGGTTTTGCGGAAGTTGGGACAAACCATGGGAGTTTCCTTAATAAACGTGTAAAGGGAT
TAGGAACCCAGAACATAAACTGTTCATTGTCAACTTTGAAGGAACCCAGAACATAAACTGTCCTAAAGCTACTTGAGAAAGATGCTTTTCTGTAATTGTA
ATGCATGATGCCATGCTGTCACCAACAATCAAAGGGGAAACTGAGGGGAAGAAGGCATGACTTCGTTATTTATCTTTTGGTTTCTTCCAACCGTTTTTCT
TTTTGGATAAAATGCAATTTACTTTTTGCCAGATGTTTCCGTGATGAAAATTTAAGAGCTGATAGACAACTTGAGTTCACCCAACTAGACATGGAAATGA
CCTTTACTCCTTACGAGGATATGTTAACACTTAATGAAGAATTGATTAGAAAGGTTAGACTACACTATCTGTAATCAGACCTCTCTAACAGCTTATAAAA
TGCATATTATTCATTATTTTGAAACTTGGAAGTAATAAAAGCTTATCATGACTTGAGGTGGAAATTCGGAACAAAGGAATAAGGTATAAATTGAAGGGAA
TTTCCTTTAATGATTTGAATTGCCAAATGCCATCATTGAAGATTTAGAAGCCTGTATAAATATCAACTGAGAATGCAGGACAACTAAAGACAAAATTTAG
AGGCAAACACCTTGTTCTTAGATCTTAAAATCTCATTAAATAGCTTTATGAGCCA