Detailed information on CNT0000143 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q570U6|EF4L4_ARATH, E-value = 2e-46

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0009970, E-value = 4e-21 (S. tuberosum)

Expression of CNT0000143

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.5677.2867.23812.13516.23621.90416.78820.17823.34819.16523.53520.77718.5515.91611.19leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02468101214161820222426

Peptides detected in this lncRNA

>peptide 1 (118 aa)
EEQGIYVTLHMCGVGIGVQCGATCKTKLVYVLRCLVCARNTHTPWCKRGFNAIISSVLFLLSGFFSIISGLSFFSFASHIPFSSKYLYIFLSTPTKFQKF
PLLSPFHVTYHNWDAPLS*

>peptide 2 (39 aa)
MEKSTRRELDPADLLNLSFRARNQEVYSESGRNLFGETV*

>peptide 3 (34 aa)
MFKFMKWSMFTDHLVKFSSLTFLDPIDVWWLSSR*

>peptide 4 (46 aa)
RRTRHLCYITHVWCWHWGSVWGNLQDQTCVCPALFGLCPQHTHAVV*

>peptide 5 (114 aa)
MDGDIFGELGNSTQVDSRLLQVFQKSLLQAQDILNQNRLLINEINQNHESKMPDNLSRNVGLIRELNSNIRRVVDLYADLSNSFTKSREASSEGDSSGTL
KSDGKVNQKRIRSS*

>peptide 6 (127 aa)
KKNKASMLHYTCVVLALGFSVGQLARPNLCMSCAVWFVPATHTRRGVNEVLTLSYHLSSFFSLDFSPSFQGFLSSLLPPIFHSPQNISTFSSLPQQNSKN
FPSYLLFTSLTTTGMLHFLKDYLLTES*

Sequence

>CNT0000143
AAGAAGAACAAGGCATCTATGTTACATTACACATGTGTGGTGTTGGCATTGGGGTTCAGTGTGGGGCAACTTGCAAGACCAAACTTGTGTATGTCCTGCG
CTGTTTGGTTTGTGCCCGCAACACACACACGCCGTGGTGTAAACGAGGTTTTAACGCTATCATATCATCTGTCCTCTTTCTTCTCTCTGGATTTTTCTCC
ATCATTTCAGGGCTTTCTTTCTTCTCTTTTGCCTCCCATATTCCATTCTCCTCAAAATATCTCTACATTTTCCTCTCTACCCCAACAAAATTCCAAAAAT
TTCCCCTCCTATCTCCTTTTCACGTCACTTACCACAACTGGGATGCTCCACTTTCTTAAGGATTATTTGTTAACTGAGTCCTAAGTGTAATTGAGATGGA
CGGTGATATATTTGGAGAATTAGGCAATTCAACTCAAGTAGATAGCAGGCTTCTACAGGTATTTCAAAAGAGCTTATTGCAAGCTCAAGATATTTTGAAT
CAGAATCGGTTGCTGATCAATGAGATAAACCAAAACCATGAGTCCAAGATGCCTGATAATCTGAGTAGAAATGTGGGTTTGATTAGAGAGCTCAATAGCA
ATATCAGAAGGGTGGTTGATCTCTATGCTGATCTCTCTAATTCCTTTACCAAGTCCAGAGAAGCTTCTTCTGAAGGTGACTCCTCTGGGACTCTGAAGTC
TGATGGAAAAGTCAACCAGAAGAGAATTAGATCCAGCTGATTTATTGAATTTGAGCTTTCGGGCACGCAATCAAGAAGTTTATTCTGAATCTGGAAGGAA
TTTGTTTGGTGAGACTGTGTAACTTCCTCCAAAGTTATTTTTGTGCCAAGTCTTCCATATTGGTGTTTATGTTTAGAGGGCCAGAGATTTAGTTAATCAT
CTGATCTATAAAAGTAGCTTCAATTTGAGGACTATACAATTGTGATTTTGTGTAACTATGTTTAAATTCATGAAATGGAGCATGTTCACGGACCATTTAG
TCAAGTTTTCAAGCTTGACCTTCTTAGATCCAATTGATGTTTGGTGGTTAAGTTCTAGATAGTTATTCATTTGTTCTGCTTGTTTGATCATTTGATTGGT
TGTTGTTAGTTGCTTCCCCTTTGGTTCTGTATTTGGATATTTGATGCCTGAGATCCAATAACTAATTTACTGCTTAAT