Detailed information on CNT0000153 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000153

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.9091.3371.6140.6620.5781.271.9882.2635.1924.5082.3232.8192.3132.4932.016leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.5

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MLCQPQPEAISGSSASFSPLFLLSLLPLLPSLDLIPPICCDLLLPLRCATQIHTVVGFVQ*

>peptide 2 (36 aa)
MKCCCQESSLTSDQSKFHLMWFRGGVFCSKFLLHVG*

>peptide 3 (72 aa)
IIFFFTFSLFFEENFTCVYVIYLVFNCYLQNILFPKLYVKMQYCVSCDIHSMLGYAPALIRIIVSLQSDSSG*

Sequence

>CNT0000153
ATAATTTTCTTCTTTACCTTCTCTCTTTTTTTTGAGGAAAATTTCACATGTGTTTATGTTATTTATTTAGTTTTTAATTGTTATTTACAGAATATACTCT
TTCCCAAACTGTATGTGAAGATGCAGTATTGTGTTTCCTGTGATATCCACTCCATGCTAGGGTATGCTCCTGCACTGATAAGAATAATTGTGAGCCTCCA
AAGCGATTCATCAGGATGATGCACAAAGGCCCGGTCAGCCTGGTTAGTGGTCAAGCACCTCGTCCTGCTGGCATTGGAGCACCTGTCCGAACCTAAAAGC
AAATCCTAAGAAAAAGCCTTCATTTTAAGCTTGAACCATAAGCTAAAACTTTTTTTGTTGCCTAATTTTGAGGCCAATTCTAGGGTGAACCACCCAAACA
AGTGGTGTACAATGGATCACTCTTATTTACCATAAGATTCATCTAATTTCATTTCTCTTATCTTAAACCTCTCCCACCAGATTCAAGCTCCTTCCCGGAT
ATGCTCTGTCAGCCTCAGCCGGAGGCGATTTCGGGCAGCAGCGCTTCATTTTCTCCCCTTTTCCTTCTTTCTCTTCTTCCCCTCCTTCCCTCCCTAGATC
TGATCCCCCCAATCTGCTGCGATCTCCTCCTTCCTCTTCGGTGTGCCACACAGATCCACACCGTTGTTGGGTTTGTTCAATGATGGTCAATCTTGATCTT
GTGGTCAACGGTACATTTTGGTTTTGGGAGGAAAGAAAATGATTAAAAAGAATGAAATGTTGTTGCCAGGAATCATCTTTGACGTCAGATCAATCTAAAT
TTCACTTAATGTGGTTTCGTGGAGGGGTATTTTGTTCTAAATTTTTGCTACACGTTGGATAACATCTTTCTAGTTATAATTTGGCGGTTTTTATGAAGAT
TAATTGTAATTTTGTGGGTTTAGTGCCATAAACCTATGTCAAAATTCTTCTATGGTTTCTAATGACAATTTACGAACATGC