Detailed information on CNT0000159 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SXB4|Y1130_ARATH, E-value = 4e-36

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0008295, E-value = 6e-09 (S. tuberosum)

Expression of CNT0000159

Peptides detected in this lncRNA

>peptide 1 (52 aa)
ILTQLRRPSATRCGSYKPEFFFPEIISRTITPKLKTSDFSENCPSIAYSGDI*

>peptide 2 (42 aa)
MRRSKKCERIRNNIMPNLLCSNNSICTFLILIYFNNSSQTKI*

Sequence

>CNT0000159
CATACTCACACAACTCAGGAGGCCCTCAGCAACACGATGTGGTTCATATAAGCCTGAATTCTTTTTTCCTGAAATAATCTCTAGAACCATCACTCCAAAA
CTAAAAACATCTGATTTTTCTGAAAATTGTCCAAGCATTGCATATTCTGGAGACATATAACCACTGAAAAATACAATAAAAATAATAATGTTCATTTAGA
CAAAATAAACTATGCGAAGAAGCAAGAAATGTGAAAGGATAAGGAATAATATTATGCCAAACTTACTATGTTCCAACAATTCTATTTGTACTTTCTTGAT
CTTGATTTATTTCAACAATTCTAGCCAAACCAAAATCTGAAATTTTTGGAATCATATTTTCATCTAATAAAACATTACTAGGTTTGAGATCACGGTGTAT
GATTTTGAGTCGAGATAATTCATGTAAGTAATGAATTCCTCGAGCAATTCCTCCTATAATGTTGTAGCGTTCCAACCAATTTAACATCTTTGCTCGTTGA
GGATCTGCTTGTTTAACATTGAAATGTGAGTGTGAGATGTTT

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G16153.1 Uncharacterized protein protein coding CNT0000159 94 138 CDS Trans
GLYMA06G40141.1 Uncharacterized protein protein coding CNT0000159 100 97 CDS Trans
GLYMA06G40350.1 Serine/threonine-protein kinase protein coding CNT0000159 91 97 CDS Trans
GLYMA06G40461.1 Uncharacterized protein protein coding CNT0000159 99 94 CDS Trans
GLYMA09G27720.2 Uncharacterized protein protein coding CNT0000159 515 508 CDS Trans
GLYMA09G27782.1 Uncharacterized protein protein coding CNT0000159 519 483 CDS Trans
GLYMA09G27782.2 Uncharacterized protein protein coding CNT0000159 519 483 CDS Trans
GLYMA09G27782.3 Uncharacterized protein protein coding CNT0000159 519 483 CDS Trans
GLYMA09G27804.1 Uncharacterized protein protein coding CNT0000159 782 463 CDS Trans
GLYMA09G27850.2 Uncharacterized protein protein coding CNT0000159 505 483 CDS Trans
GLYMA09G27850.3 Uncharacterized protein protein coding CNT0000159 505 483 CDS Trans
GLYMA09G27850.4 Uncharacterized protein protein coding CNT0000159 505 483 CDS Trans
GLYMA12G20460.3 Uncharacterized protein protein coding CNT0000159 182 211 CDS Trans
GLYMA12G21040.3 Uncharacterized protein protein coding CNT0000159 120 92 CDS_UTR Trans
GLYMA12G21040.4 Uncharacterized protein protein coding CNT0000159 120 92 CDS_UTR Trans
GLYMA12G21090.4 Serine/threonine-protein kinase protein coding CNT0000159 121 90 CDS_UTR Trans
GLYMA13G32190.2 Serine/threonine-protein kinase protein coding CNT0000159 104 154 CDS Trans
GLYMA16G32680.2 Uncharacterized protein protein coding CNT0000159 1197 544 CDS_UTR Trans
GLYMA16G32680.3 Uncharacterized protein protein coding CNT0000159 1197 544 CDS_UTR Trans
GLYMA16G32680.4 Uncharacterized protein protein coding CNT0000159 935 416 CDS_UTR Trans
GLYMA16G32710.1 Uncharacterized protein protein coding CNT0000159 1288 542 CDS Cis
GLYMA20G27610.2 Uncharacterized protein protein coding CNT0000159 121 210 CDS Trans