Detailed information on CNT0000166 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P55607|Y4OV_RHISN, E-value = 5e-35

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000166

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MDKHGCTYLVLKFNFLLEERGWMDQILDHLVIEPPILCYEELFKRISY*

>peptide 2 (31 aa)
MNSFGSLQYKCCLFWTRYWTCIFQYNIPNWD*

>peptide 3 (37 aa)
MYLNGLLCDLSNTLPHTRALLVLKHGQAWVHLPCVKI*

>peptide 4 (86 aa)
MMTQTQIAFCFSHWTFTLNILLFPSPLQHPPTDVHCFEKGFFLKDYQSNLVTFHCLVSPLTTTYLKFVYVQIKKHLKNQAFVVKST*

>peptide 5 (32 aa)
MHKGFEVTFIPPWHNTMTPGLILCAASAIACT*

>peptide 6 (41 aa)
MLFSFLFWVYFSYSFGLAIHNLSQTSFPMWMENIKLFNTLL*

>peptide 7 (76 aa)
MSRTTALASEKGNNPANEPLPAIRKRPELYNTIRSTPPASSNLADIKEIFSTQSNSEDLTSVKLNSSLTQKETIGF*

>peptide 8 (60 aa)
MIWLTPPTAKFTINNQQIHSLISTNLTPKTNTQVTTLTKRYPRNCIKVSRWMLHSSLKYN*

>peptide 9 (47 aa)
MGHYNIGANFSHFNSFILIESIWGCKETHFMGFLDHLNFQADNLMGK*

>peptide 10 (29 aa)
MKNLVPIIFYVYTRTREVKQQSLRIYYLL*

>peptide 11 (30 aa)
MMRIRLYLKNTRLLTSQNPHSNKLNKIKEN*

>peptide 12 (69 aa)
MKNSSKGYPIRSSHMNGLLNYISILTLTCRSINEKFSANNLLCLYENQRSQTTESKNLLSPLGIITSKL*

>peptide 13 (37 aa)
MNSLWQNTQEHNANSNEMRTSPCFWEFTRCIDNCCNA*

Sequence

>CNT0000166
TCCATTATTTCCAAAATTGTATATCAGTAAATTCTATAATGTTCACAAATTTGGTAGGTACTAATCACAAATAAAAACAGTCATATTAGCAATGTAGCGT
ACAGCACACTGGCATGAAAAGTACAAACATGTTAAACCTTAATGAATAGAAATTGACTTGTACTGTTTGACTGTATTTGTAATAGCCTGCTCCACTGGAA
GTCTTTCCATACTTGAAGCCCCATAAAACCCATGAACTCCTTTGGTTCTCTTCAATACAAATGCTGCCTCTTTTGGACCAGATATTGGACCTGCATATTC
CAGTACAATATTCCAAACTGGGACTAAATGTTGGTAAACACTAACCACTATTTCATGAAGCAAAGTGAACAGTGTATGTAGAGAGGTTCAATAACTATAT
CAAGACTCACCCTTTTCTAGTTGCCAAAATTTACTGACAAAAATTACCCCTACAAACTACAAATTTAGCTCACAAGGTAAACAGCAAACACAGTTTAACT
AGCTAAGATGATATGGCTCACACCCCCTACCGCAAAATTTACCATCAACAATCAACAAATACATTCACTAATCTCAACGAATCTCACACCAAAAACTAAC
ACTCAAGTAACAACTCTCACTAAAAGATATCCAAGAAATTGCATAAAGGTTTCCCGTTGGATGTTGCATTCTTCACTGAAATATAATTGAGCAGAGCACC
TCAACACTTTGAAAACACATTATAACCTGAGTCCAATCTTTCTCTGTTTAGTGTTTACAGATCAAAGCCTTTCTAATTCCTTTGTACTGAAACCCTTCCT
CATCCATGCTTTTTTCTTTTCTTTTTTGGGTTTATTTTTCTTACTCTTTTGGGTTGGCCATACACAATTTAAGCCAAACAAGTTTTCCAATGTGGATGGA
AAACATAAAATTATTCAATACATTGCTCTAACATAAGACATAGGAAGGTGCTTTTCAGTTATTAATTAATAATAAGCACTCTGCATTTTGTCACTAGACC
ACCCAAATAATAACTTGTTTTGATAAGCACCCAAATAATAATAATTGACTAGTGAACACTTAATTTACTATTTAATCTTAAAATAAACATGCATAAAGGC
TTCGAGGTGACTTTCATACCTCCATGGCACAACACGATGACACCAGGATTGATCCTATGTGCTGCATCTGCAATAGCTTGTACATGAACTACACTTTCTT
TAAGTGAAACAGATGTTTTTGCACCTATGGAGCCTGTTGTAGTTAGACCCATATGGGCCACTATAATATCGGCGCCAACTTTAGCCATTTCAATAGCTTC
ATATTGATTGAAAGCATATGGGGTTGTAAAGAGACCCATTTTATGGGCTTTCTGGATCATCTCAACTTCCAAGCTGATAATTTAATGGGAAAATGAAATA
AAATTGTAAGAGGTGTAATAGTTCAACTAATATGATATATTGAGAAATTCTTTTCCAAATACCCACCTATATCCCATTCCCGTTTCTTCAAGATTTAGTC
TAAAATTTCCATCAAATAATCCAACTGTAGGAAAATTTTGTAACCCAGAGAATCCAGTAGACTCCACCTGTTTAAGGAAATAATCCATTCTACGGAAGAG
ACCAGTTGCACATACACCAGCAAGAACTGGAACCTTCTTTACTACCTGAAAACAAAATATCAATATGCTAGACATAATGTAAAAGAAACAGATTCAGTGC
TAGTCTGGCAAGGGGGTTTCATAATTTCAAAAATTACTTAATACCTAGCTGACCTGACCTCGAGAGTTAGTATTTCCACTTTCTTAACTGTCATGAACCA
ACTATTTAAAATCCTTAAGGCATTATGTGAATGTACTTGAATGGCCTTCTATGTGACCTTTCTAACACATTACCTCATACAAGAGCCCTTTTGGTTTTGA
AGCATGGACAAGCATGGGTGCACCTACCTTGTGTTAAAATTTAACTTTTTATTGGAAGAACGAGGGTGGATGGATCAAATTCTAGATCACTTGGTCATAG
AGCCTCCGATACTATGTTATGAAGAACTCTTCAAAAGGATATCCTATTAGGTCAAGTCACATGAATGGTCTTTTAAATTACATTTCTATTCTAACATTAA
CCTGCAGATCAATTAATGAAAAATTTAGTGCCAATAATCTTCTATGTTTATACGAGAACCAGAGAAGTCAAACAACAGAGTCTAAGAATTTATTATCTCC
TTTAGGGATCATTACCAGTAAGTTGTGATGATGACCCAGACCCAAATTGCTTTCTGCTTTAGCCATTGGACCTTTACCCTGAACATCCTACTGTTCCCTT
CACCTCTTCAACACCCCCCTACTGATGTACATTGTTTTGAAAAAGGTTTCTTCCTTAAAGACTACCAATCAAATTTGGTGACATTTCATTGTTTAGTTTC
TCCACTTACCACCACCTATTTGAAATTTGTGTATGTTCAAATTAAGAAGCATCTGAAAAATCAGGCATTTGTAGTGAAAAGTACTTGAATAAAAGTTAGT
AGTTGGACAACAGTAATACTTCTAAAGTGTCATGGAACAAGTAAAAAAATAAAGGCATACTGGCAAAACTTCATTGGCCATGTCAAGAACGACAGCATTA
GCATCGGAAAAAGGTAATAATCCAGCTAATGAACCTCTTCCAGCCATTCGGAAGCGCCCTGAATTGTACAATACTATTAGATCAACTCCTCCAGCTTCTT
CAAACTTAGCAGATATAAAGGAAATATTTTCTACCCAAAGTAATTCTGAGGACCTTACTTCAGTCAAATTGAACAGTAGTTTAACACAAAAAGAAACTAT
TGGCTTTTAATAAATATTTTCATGCCAACACAAATTAAGTTTTACAGGAGCAGAAAACACATAATGTGAAAAAAATTGAAAAATGAATTCTTTATGGCAA
AATACTCAGGAACATAATGCAAATTCAAATGAAATGAGAACCTCTCCTTGCTTCTGGGAATTCACTAGGTGTATAGACAATTGTTGCAATGCTTGACGCA
TTTGAAACATTATCCTCGTGAAATTGTTCAACAGATTCAGGACTAGCTACTTGTTGCTGAGTAGAATCTTTACTAGTTTTCTCATTAATCTCTAAAAATG
CATCAACCAATGCATTTGCAAATTCAAGGTCATTAATATGATGAGGATACGGCTTTACCTTAAAAATACACGACTCTTAACTTCACAAAATCCTCATAGC
AATAAATTAAATAAAATTAAAGAAAATTGAAGCTTATAGCTATGGTAAATAATACTATTGACCAATCATTGTACCTGTCAATCATCATTAGTTGGAATAA
GGTTTTGTAATTCACGAAGAAGAGTTCCCGATGCCTCTGGATCATAAAAAGGCTTCCCGGGTGCATCTAAAGCAGAGACACACTTTTCTGTAAGGCAAAC
ACAAATCATA

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G06040.1 Uncharacterized protein protein coding CNT0000166 1233 707 CDS Trans
GLYMA02G06040.1 Uncharacterized protein protein coding CNT0000166 634 286 CDS Trans
GLYMA02G06040.1 Uncharacterized protein protein coding CNT0000166 1462 728 CDS Trans
GLYMA02G06040.1 Uncharacterized protein protein coding CNT0000166 572 237 CDS Trans
GLYMA16G24730.2 Uncharacterized protein protein coding CNT0000166 1853 700 CDS Cis
GLYMA16G24730.2 Uncharacterized protein protein coding CNT0000166 1106 407 CDS Cis
GLYMA16G24730.2 Uncharacterized protein protein coding CNT0000166 2772 1026 CDS Cis
GLYMA16G24730.2 Uncharacterized protein protein coding CNT0000166 1104 402 CDS Cis
GLYMA17G34640.1 Uncharacterized protein protein coding CNT0000166 100 135 UTR3 Trans