Detailed information on CNT0000167 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000167

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGWYLHNWQFNNGPLSAHIVHGIGGIADEHDII*

>peptide 2 (32 aa)
MTREIFWFLLYPKLLIACCSYSRGLCTTLPVH*

>peptide 3 (37 aa)
MPIGGTMVWHINKLIKWNCWIKSHKKYESGCICKAAK*

>peptide 4 (41 aa)
AYGISFRYCIKIFSLTISATKNLSGCSLTISWKFRNNIKVA*

>peptide 5 (38 aa)
CIWNFISILHKNLFSNNFSYKKSLWMLTDNILEIQEQH*

Sequence

>CNT0000167
ATGCATATGGAATTTCATTTCGATACTGCATAAAAATCTTTTCTCTAACAATTTCAGCTACAAAAAATCTCTCTGGATGCTCACTGACAATATCCTGGAA
ATTCAGGAACAACATTAAGGTAGCATAGCACATGAAAAGTATGCAGAAGAAATGACAAGGGAAATATTTTGGTTCTTATTGTATCCAAAGTTGCTAATAG
CATGCTGCAGTTATAGCAGAGGGCTCTGCACTACACTGCCAGTACATTGAGAAATCTATATAGAGCAAGAGGCAATAGCACACGGCCACACACTATTTGC
AGTACTGGAACAATATTGATGGGGTGGTATCTGCACAATTGGCAATTCAATAATGGTCCATTATCAGCACACATTGTTCATGGCATTGGAGGTATAGCTG
ATGAGCACGACATCATATGATATAATATATCATTCAAAATGCTTTCTTTTTCCAACTCTTACAGTACAGGGACCATTATGGTCATAATGGAGGTATAATT
ACCTACACACTGGTTGCCAGCAAGCACTAGCAAGCCTTCTCCATACCATTACTATGTCACTCATTACCAGCCTAGAACTGCATGTCACTCTATGCCTATA
GGTGGTACAATGGTATGGCATATTAACAAGCTAATTAAATGGAATTGCTGGATCAAAAGTCACAAAAAATATGAATCAGGATGCATATGCAAAGCTGCAA
AATGATATTGTGATTTCTCA

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G06100.2 Uncharacterized protein protein coding CNT0000167 380 342 CDS Trans
GLYMA02G06100.3 Uncharacterized protein protein coding CNT0000167 380 342 CDS Trans
GLYMA02G06100.4 Uncharacterized protein protein coding CNT0000167 380 342 CDS Trans
GLYMA16G24870.2 Uncharacterized protein protein coding CNT0000167 952 344 CDS Cis
GLYMA16G24870.3 Uncharacterized protein protein coding CNT0000167 952 344 CDS Cis