Detailed information on CNT0000176 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q2R3K3|LCB2A_ORYSJ, E-value = 7e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000176

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000.190.50800001.3651.4562.6721.8382.1470.9560.258leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIVEGIYNMEGELCKRLEVIAVCKKIQGCYCDSGISCNPTATG*

>peptide 2 (40 aa)
MVGLLIPCFGSTMMYLLKALLSLSIFANFLAAFLVTFLQV*

>peptide 3 (48 aa)
MHRCIMCHNLHFMFIPLNHSMKLQMGSNISSRAKANSSIEQINAFKKK*

Sequence

>CNT0000176
AGAACCTGGAAGGGTGAGTGAATTCTAGCATAACATATTCCTCCCCATTTCCCTGTTTGAATCGTTGAATGTGCACTTTACGCTATTTGCTCCAACATTG
ATATTTCTTCATATCATGTGATTTATTTTGGGAGCGAGAAACTCATTCTCTATTTTTATTTCTTTCTTCATTTTTTTATTTATCTTCAACTAAACATATT
TTATTTTACTTTTAGCAGAGGTTTTGCCCTGATATTTTGGTTCTCATGGTTGGACTTTTGATCCCTTGTTTTGGTTCAACCATGATGTATTTGTTAAAGG
CCCTATTGTCTTTGTCCATATTTGCTAATTTCTTAGCGGCCTTTCTTGTTACTTTTTTACAAGTTTAATTTCCATCGGCATGAGTGAATTCATGTCTAAG
TTCCTATTCATGTCATCAATAAAGTTAATTGAACATGTTCTTGTTAGATTTAATTACAAAATGTAGTTTTAACATTGCTTTGACAGGTACTACTCCATGT
ATGGACATGTTGAGAAACTAGCAAAAGAAATAAAGGGGCTTCCTCTGTGGAAGGTGTTGGGGCCAAGTTATGCATAGATGTATTATGTGTCATAATTTAC
ATTTCATGTTCATTCCATTAAATCATAGCATGAAATTACAAATGGGAAGCAACATCAGTTCCAGAGCTAAGGCTAATTCCTCTATAGAGCAAATAAATGC
TTTTAAGAAAAAATAAAATAAAAAACTAGTATAATGTCTATCACACTGTTATTTATGGTTTTCAACTCAACATTATTGTGCTCTATACTCTATATTGTGT
AGTCTCTTGGAGCAAAACTATGCTAAGGGGATAATGGTTATTGTGGAGGGGATATACAACATGGAAGGAGAGCTTTGTAAACGTCTAGAGGTCATAGCTG
TATGTAAAAAAATACAAGGTTGCTATTGTGACAGTGGCATTTCCTGCAACCCCACTGCTACTGGCTAGAGCACGTATATGCATATTTGCAGCTCATTCAA
GGGAGGACCTTATCAAAGCCTTGCAGATTTTGCCCAGAGAAGCAGATCCTTATAATTGTTCTCAGATTCAAGTGAACGTCTCTTGGAGGGAAGTCTATTC
TTATTTTGCCCCGTCATTAGATAATATGTATAGGTGGAGTTTGGTTATTCATTTGAAACTTACTTTTTGCTTGGAATTTTATTACATATTTCATTATTAC
ACATTATATTAATTCAATAATTATTTGATATGGAGCCTATAGATATTTAATAAAAGTTCAAGTGTATGATGGAACCGGT