Detailed information on CNT0000189 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q20390|PPT1_CAEEL, E-value = 3e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000189

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.8252.4333.6161.5073.0882.8894.1341.8175.45.9375.5195.5165.3722.2691.681leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MATSSPFYHHNRYDPQFDSGRSFPVIKLFLLRLFLCIY*

>peptide 2 (33 aa)
MLEHDTVLIPRETSWFGYYPDGYFKPVLPPQSI*

>peptide 3 (46 aa)
MMEQSQKEEAEPSTTPFLDGSLSYWWSTPFKTFLGELIGIHEEESI*

>peptide 4 (54 aa)
VLVISPFHRIKQELSLFQINGNFISSLFQTSLHHSFIVSCATPPIRTQQVNSCW*

>peptide 5 (41 aa)
MLHLEGLGSIFSMNIIFFFFVNSCEHLVLFDFSLFYLFHFIL

>peptide 6 (36 aa)
MLWLFLHYPFSSSSPSHTQYPSLLFMELGISALTVE*

>peptide 7 (74 aa)
MALPSLSFLFIFSVSHSIPFIVIHGIGDQCSNRGVKKFTQQLSSFSGAEGYCNFYINFLSVRLEMDHGIHGLSL*

Sequence

>CNT0000189
CGTCCTTGTTATCTCTCCATTCCACCGCATTAAACAAGAGCTTTCCCTTTTTCAAATAAATGGAAATTTCATAAGTTCCCTTTTTCAAACGTCCTTGCAC
CACTCTTTTATTGTCTCGTGTGCCACGCCACCAATCCGAACCCAACAAGTTAACAGTTGCTGGTAGCCTTGACTACCATAGCAGTAACAGACCATAGTAC
CATACCCACCTTCCTTTCCTTAATCTTAACAGAAACTCAAACTTGTTCTGTTCCTACGGTTATGTTATGGCTCTTCCTTCACTATCCTTTCTCTTCATCT
TCTCCGTCTCACACTCAATACCCTTCATTGTTATTCATGGAATTGGGGATCAGTGCTCTAACCGTGGAGTGAAAAAATTCACACAGCAACTGAGCAGCTT
CTCTGGTGCTGAAGGATATTGTAACTTTTATATTAATTTTCTTAGCGTCCGGTTGGAAATGGATCATGGGATTCATGGTTTAAGCCTTTGAAAGAGCAGG
TGAAGCAAGTGAAAGAATTGAAGGAAGGATACAATATTGTTGGACTTTCCCAGGGAAATTTAATTGGTCGAGGCATTGTGGAATTTTGTGAAGGAGGACC
TCCTATAAGAATCTATAATTTTACACGTTAAAAACTTTATCTCTTTAGGAGGCCCTCACACTGGTACTGCTTCAGTTCCCATATGTGGTAGGTATCTTCT
GTGTTCTTGCAGACACCCTCATCAAGGGAGAGGTTTACAGTAGCTATATTCAAGAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAACGCCATACC
TGATTATTTGGAGAACTGTAGATTTCTTCCAGTGCTTAACAATGAAATACCAGATAAGAGAAATTCCACTTACAAGGAAAGATTTAGTAGCTTGCAGAAT
TTGGTACTTATCATGTTAGAGCACGACACTGTTTTAATACCAAGGGAAACTTCCTGGTTTGGATATTACCCAGATGGCTACTTCAAGCCCGTTTTACCAC
CACAATCGATATGATCCCCAATTCGACTCGGGTAGATCTTTTCCTGTGATAAAACTTTTCTTACTCCGGCTTTTCCTTTGCATTTATTAAATGATATCAA
TGGAGTTGCCTCCTTAAGCTTCTATTACCTATTAAGGTCATAAATATGAAAATTTTCTTAATATGGAATTCTTAGCATTAGTTACTGTTTATTGGTAGCT
TTAAACCACTACAGTGTGATGTAACATTGACTGGTAGGGTCTAACAATTGACTGTCGTAACTAAAACTATACTCTATTAGTTCTGACACATTATTCTTAT
TTTCTAAGCATATTGTTAAAGGCTTTGGCATATGAGATAACAAATCAGTGTGATACAATGTATTTCTTATGCTTTGATTTTTTACATCATGTACTTGGAA
CTTGGAAGTCATAATACATCAAATAAGCAAAAAAGTTAGCCGATGCCTTTGAAAAACAAATAACAGTTCTACGGAACATTAAAATATAAACTTTGGTGAA
AGGTTTCTTGCTATAATACACCTATTGATTTTGTTTTTCTCTATTGATCTGCTTCACAGACAGAACTCTAAATTGAGGATTGGATAGGCTTAAGAACTCT
AGATGAAGATGGAAAAGTTCACTTCATTAGTGTTCCAGGAAATCATCTTGGAATATCCCAGGAGGATATGAAAAGCTTGTAGTGCCATATTTGAAGGATC
AAACATCCGTAGAAGATAGCATCAACAAGGCTAGGTTCAGGATGCGAGGAGTTAATCAGAAAGTTATTCAAGTAATATGATGGAGCAATCTCAAAAGGAG
GAGGCAGAACCATCAACCACTCCATTCCTTGATGGATCATTGTCATATTGGTGGTCTACACCATTCAAGACTTTCCTTGGTGAATTGATTGGCATTCATG
AAGAGGAATCTATATAAAGGAAACAATCACATTACATGTGTCTGGACTGATCAAAAGATTTATCAAATTAGATGGATATAGCAAAACAGTAATATATGCT
GATATTATTTTAGTTGATAAATATCAAAATGCTTCACTTGGAAGGCTTAGGTTCTATTTTCTCCATGAATATTATCTTCTTTTTTTTTGTGAATAGTTGT
GAACACCTAGTTTTGTTTGACTTCTCTCTATTTTATTTATTTCATTTCATTCTACC