Detailed information on CNT0000196 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000196

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.1624.2393.544000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAIKKVLILVIYIFIVQSSSSSDLNKITLQFRLY*

>peptide 2 (36 aa)
MAGSGSIATNKEVARFERSCFCWHSRRLGKRSPYGT*

>peptide 3 (112 aa)
HVSDQRRRQHPYEDVCLARARLSNALLPRNSSVHLRDMSTVPPSQLCSLLSLFLFDTYLKYLPCSSSYYIKRFILSTSFQISVQKHSNFAISYPVSFLTR
KKRKEGSFNVRE*

>peptide 4 (35 aa)
MLTYRSYISNKHGRKRVHSNKQRGCKIRTKLLLLA*

>peptide 5 (49 aa)
TCLIKDAANIPTRMSAWHVPDCQTPYYLGIVVCIFVTCPLSLHPNFALS*

Sequence

>CNT0000196
CACGTGTCTGATCAAAGACGCCGCCAACATCCCTACGAGGATGTCTGCTTGGCACGTGCCAGACTGTCAAACGCCTTATTACCTCGGAATAGTAGTGTGC
ATCTTCGTGACATGTCCACTGTCCCTCCATCCCAACTTTGCTCTCTCTTGAGTCTTTTTCTCTTTGACACTTATCTTAAATATCTTCCTTGTAGTAGTTC
TTACTATATCAAGAGGTTCATATTGTCAACTTCATTTCAAATTTCAGTGCAAAAGCACAGTAATTTTGCCATTTCTTACCCTGTCTCATTTCTGACCAGA
AAGAAAAGAAAAGAAGGAAGCTTCAACGTCAGAGAGTGACACAATATAATAAAGGGTTATTTTTGTCATTCCTCTCTTCTTTGCTATTCTACTGCTCTAA
TACAATGGCCATCAAGAAAGTTCTAATCCTGGTCATCTACATTTTCATTGTTCAATCCTCTAGTTCAAGTGACCTCAACAAAATCACTCTTCAATTTCGC
TTGTATTAATTGTGGTAAAAATCATTGCTTAATACATGCTTACTTACAGGTCGTATATATCAAACAAACATGGCAGGAAGCGGGTCCATAGCAACAAACA
AAGAGGTTGCAAGATTCGAACGAAGCTGCTTCTGTTGGCATAGTAGAAGACTCGGCAAGAGAAGTCCCTACGGGACCTGACCCCCTTCATCACATCAACC
ACCCTATAGGCCATTGAATTTCCTTCCTTAAAAAACTCTGCTATATATACTTTAGTAGATTTTAGTGTAGTAGGTTCGTGCTTTAACAAAGGACCCTCCT
CATTAATTCCACTATTTTGTTTATTTTTCTACATCATGTATTTAGTGCTTACGGTTTTGTAATTCACGGTCCATATCTTCTGCTATGTGCTTACTTTTGT
ACATAATCAGAACCGATTATACTTGGGA