Detailed information on CNT0000198 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 3e-41

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000198

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MLDLSKLKSGFFFRVVGQTQRIKEPATWVQPFLWVKFCISLKLYVPYHYHLNPDQCGQ*

Sequence

>CNT0000198
AGGAAGACCACCATGGCTAAGCGAGAATGCTTGATCTCAGCAAGTTGAAGTCTGGCTTTTTCTTCAGGGTCGTTGGCCAAACCCAGAGGATCAAAGAACC
TGCCACCTGGGTACAACCTTTTCTCTGGGTCAAGTTCTGCATTTCTTTGAAACTCTATGTACCCTATCACTATCACCTCAATCCAGATCAGTGTGGTCAA
TGAAAATGGAAGAGGAAGTCCCAGGTAAGATGATCCTTCCACTAGCTCTACCTGAAAATTAGAGTTACAGGAGCCAAACAATTAGAATAAACTTAACATG
TTCTGTATGATTTATTTGAGTTAATTTTTTTTGCTCTGTTCAGAGACCATGGCAAGAGGTTCCTAAGAGACGAATTCCAGTTACTACTTGACTATAACTC
ACTCAAGAAAATTTTACATATAAAAAAAATTAAATATGATTCTTCTATTAAATAGTTAAGATTTTGTGACTAGACCTTCCACCTTTGTGTTAGTCTTATG
GATTTTTAATTTAATTTAATAGTTATGCATTTTTC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G35130.1 Uncharacterized protein protein coding CNT0000198 1384 501 CDS Cis