Detailed information on CNT0000199 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000199

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)32.0210.22944.7931.327684.06383.163408.428228.2499.5139.2729.5697.4863.2933.3312.02leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)050100150200250300350400450500550600650700750

Peptides detected in this lncRNA

>peptide 1 (191 aa)
HIAQKPPSPPKVKPPHPPKPPKVEPPHPPKPPKKPPCPPKVKPPHPPKPPKEPPTPPKEPPPTPPKKPCPPIFKKPLPPIPKLPPLPPVPIYKKPLPPLP
PLPKLPPLHPVPIYKKPLPPLPPLPKFPPLHPVPIYKKPLPPLPPLPNCLHSSHFHLFPNFLQSTFSITPNGSQYHLLPLILRLYILILQR*

>peptide 2 (186 aa)
ISHRNHQAHQRLSLHIHQNHQRLSLLIHQNHRRNHHAHQRLSLHIHQNHQRSHQHHQRSLLQHRQRSHVHQSSRNHFHQSLSCHHFLQFQSTRSHFHLFL
HSLSCHHFIQFQSTRSHFHLFLHSLSFHHFIQFQSTRSHFHLFLHSLIASTQATSTSSQTSSKALFPSPQMVPSTTFFLSSLGFIY*

>peptide 3 (40 aa)
MHFFCLLFCAFRMIKYIEEVYLLLIKPWKDRACDEPGVRI*

Sequence

>CNT0000199
CATATCGCACAGAAACCACCAAGCCCACCAAAGGTTAAGCCTCCACATCCACCAAAACCACCAAAGGTTGAGCCTCCTCATCCACCAAAACCACCGAAGA
AACCACCATGCCCACCAAAGGTTAAGCCTCCACATCCACCAAAACCACCAAAGGAGCCACCAACACCACCAAAGGAGCCTCCTCCAACACCGCCAAAGAA
GCCATGTCCACCAATCTTCAAGAAACCACTTCCACCAATCCCTAAGTTGCCACCACTTCCTCCAGTTCCAATCTACAAGAAGCCACTTCCACCTCTTCCT
CCACTCCCTAAGTTGCCACCACTTCATCCAGTTCCAATCTACAAGAAGCCACTTCCACCTCTTCCTCCACTCCCTAAGTTTCCACCACTTCATCCAGTTC
CAATCTACAAGAAGCCACTTCCACCTCTTCCTCCACTCCCTAATTGCCTCCACTCAAGCCACTTCCACCTCTTCCCAAACTTCCTCCAAAGCACTTTTTC
CATCACCCCAAATGGTTCCCAGTACCACCTTCTTCCTCTCATCCTTAGGCTTTATATATTAATATTGCAGAGGTAGATGATTACTCTTGTTGGGTCTGCA
AAATATGCATGCATTTTTTCTGTCTTCTTTTTTGTGCTTTCCGTATGATCAAGTATATTGAGGAAGTCTATTTGTTGCTAATAAAGCCTTGGAAGGATAG
GGCATGTGATGAGCCTGGGGTGAGAATATAAATAAAATTTAAACTAAAATAGAGCGATATGATTAAGAAGTTTAAAGTGATGTGAAGTATGAGTGTGATC
AATATTGTTGTTCTCGAATGAAGATCATCATCGGGGCAAGTTAGACAACCCAGATCATTGTATTTATTTTTAATTAATTTCATGTGTATACAAATGCATT
GTGATTGGATAGTTAAGTTTTCTAATATCTCTTCAAAGAATAAGAGTTCATTTATGCTCATTTAATAGCAACAACCATG