Detailed information on CNT0000200 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6F7B8|ACR1_ACIAD, E-value = 6e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000200

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKWSHTFILYSNLIFSLQYIFVSFHLNPPNLLYSILI*

>peptide 2 (32 aa)
MKFMFLETSPMFDRSERELKNNEMESHFYTLF*

Sequence

>CNT0000200
GCCAATTACTTTTAATACCTTAATGTATCAGTGAAAGCATGAAGAGCAGCTTTGGAAGCATTGTAAGTGCCTGACCAAGGTCCAGAGGCCAAGGCACCCA
CGCTACCAACGTTGACTATCTCCCCCTCTTTCCTAACAGCCATATGAGGAACAACGGCCTGAATCATTCTCAACGAACCTGCATGCTTATGCCCAATGAA
ATCTAGTATCAATCAAGTTTAACATGAAATTCATGTTCTTGGAGACTAGCCCTATGTTTGATAGAAGTGAAAGAGAACTAAAAAATAATGAAATGGAGTC
ACACTTTTATACTCTATTCTAATTTAATATTTTCACTTCAATACATTTTCGTTTCATTTCATTTGAATCCACCAAACCTTTTATACTCTATTCTAATTTA
ATATTTTCACTTCAATTCATTTCATTCCACTCTATCAAAAGCACACTAGATAAAAAGGGTAGTAGTACAAGCACAGCCAAAGCAATACTAACCGAAGACA
TTGGTATCGAAAGTGTTTTGAATGGCAGAGAGAGGAACCTCGGCAAGGGGGCCCACACACTGAACACCAGCGTTGTTAACAAGCA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G36074.1 Uncharacterized protein protein coding CNT0000200 1620 585 CDS Cis
GLYMA18G02330.1 protein coding CNT0000200 382 199 CDS Trans