Detailed information on CNT0000210 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LT96|Y5977_ARATH, E-value = 3e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000210

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3120.6320.8610.5740.1251.8861.231.1540.93.4951.231.711.3711.81.31leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDWIRRLKVALGAARGLAYLHELADPPIITN*

>peptide 2 (53 aa)
MRGRIELLLKQNKLSEKHIKDLLQEYHDNIGDLDGPKEKERAQTKIQKFITAL*

>peptide 3 (36 aa)
NNGHTVEILIQSHFSCQLFFPKLKVSNIFSIVRNTK*

Sequence

>CNT0000210
ATAACAATGGACATACTGTTGAGATTTTAATACAATCTCATTTCTCTTGTCAATTATTCTTTCCTAAACTAAAGGTATCAAACATATTCTCAATAGTTAG
AAATACAAAGTAATGGCTTCTTCTTCGTTACCAATTCTAAGACTAGAAATCTGTGTGTCATGGAGAAACTTTGATAAGAGTTAACCGGAACATAACACAA
AATAGTAATATAGCTCTGATGCCAATAGTCACAAATTATTAACTCTATCACATTACTTAAATTATTTTTCTTCATTTGATTTTGCCAATGCAGGAAAGTC
TGGAATCTGGATGGATTGGATAAGGAGGCTTAAAGTAGCATTAGGTGCAGCCAGGGGTCTGGCCTATCTTCATGAACTTGCTGACCCACCTATCATAACT
AATTAAATACTATTCTATTACCAGCAAGAGCTTTTACAAAGATTGATTGCTGTCATTTTGGGTCATCTTTGGTGTTCAGAGCAAGTATTTACATCTAAAT
ATTGGCATCCACAAATGAGAGGGAGAATTGAGCTACTTCTCAAGCAGAACAAACTTAGTGAGAAGCATATCAAGGATCTACTTCAGGAGTATCATGACAA
TATTGGTGACCTTGATGGACCGAAAGAGAAGGAGAGAGCACAGACAAAAATTCAGAAGTTCATAACGGCATTATAATTAGTATATACAATATATTAACTC
CCTCGTGGATTTAGCATACTTGGAACTGGCACACCCTGACGCCCTTTCTCATTCACTCTTCGACAGTGCAGATACTCGAGATAAGAGGGCACATCTTACA
CCATCTTCAGGCAAACTATTACAACGTGTATCATTGTTCCCCGGTGCAAATCTATATAATCCCTTCCCTCACCATCACCACCTTGGTGTCCTTGGCCTGC
CCCTGAAAGACCCTCTGGTATGTAGGTTAAATGATTAGTTCTTCACACTAGCTATAACGCTAATCTAATGTGTACATTATGCTTTTGCATGCTTGTTACG
CCTAAATAAAAGCATTACTTCATCTTTCAATTGCCAAATTGGTTATTAATGAGTAAAATGAAAATTAATGGCTAGGCTAATTTCCCCTTACCTGAAGGTG
GTAGCAGTTGTTCTTGTTCGTGAAGTGCTCCC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G32931.1 Uncharacterized protein protein coding CNT0000210 962 352 CDS_UTR Cis