Detailed information on CNT0000215 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000215

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.5212.6012.8056.3011.3740.4310.6751.1084.5865.0784.455.0284.3428.8938.988leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVLDEGEDEFPCQEENMYSKFDDGASLFQLILHVVALYYNNLKYVKVL*

>peptide 2 (46 aa)
MILMRRSRIVTMKTMMVWCWMKGKMNFLVKRKICIQNLMMGLLCFN*

>peptide 3 (30 aa)
MLNKSSQFQPMTFTFLSASSPFNSGCLDCG*

>peptide 4 (115 aa)
MLTHIVTNPTHDTTTFSCFPLPYTMPKSRDCRVTVVNLVTSLARRCISFIYNDALTLCTPLRTATLGRGRARTSPGSKNIPQSTARCGRGRILLCSMLLA
WYPMIRFFFFFLRHR*

Sequence

>CNT0000215
TTGGGGATTTAAAACCTTTTTTCCTTTCACTCTCATGAAATCCAACAATGCTTACTCACATAGTCACAAACCCTACCCATGACACCACCACATTCTCTTG
CTTCCCCCTCCCTTACACCATGCCCAAATCGCGTGACTGTCGCGTAACCGTGGTCAACCTCGTCACCTCCTTAGCCCGCCGTTGCATCTCATTTATCTAC
AATGACGCTCTAACTCTCTGTACCCCTCTAAGAACTGCCACCCTCGGCCGCGGAAGAGCTCGCACTTCTCCCGGCTCCAAAAACATACCGCAATCAACTG
CGCGATGTGGTAGAGGACGCATTCTGTTATGCTCCATGCTTCTTGCGTGGTACCCTATGATCCGATTCTTCTTCTTTTTTCTTCGTCACAGATAGCTTGA
CTTTAGCATTTGACTCGTGAAGTAATATAATCCAAACAAGCTTCAACAACATTCTTTATGCTCAACAAGTCTTCACAGTTTCAACCAATGACCTTCACCT
TTCTCTCTGCGTCCTCTCCCTTTAATTCAGGCTGCTTGGATTGTGGATGATTCTGATGAGGAGGAGTCGGATTGTGACAATGAAAACAATGATGGTATGG
TGTTGGATGAAGGGGAAGATGAATTTCCTTGTCAAGAGGAAAATATGTATTCAAAATTTGATGATGGGGCTTCTCTGTTTCAATTAATCTTGCATGTTGT
AGCTTTATACTATAATAATTTGAAATATGTTAAGGTGTTGTGACAGGGTGGTAATCATGGCCCCTGGCTGGGTTGCTTTTTCTTAACTATCAACAAGTAT
TTGTTCTTGCTAATGTGTGTTTGTG