Detailed information on CNT0000217 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P49310|GRP1_SINAL, E-value = 4e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000217

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)93.17371.04893.6552.6126.8352.6833.0790.9198.9225.9654.70810.0068.2814.50619.541leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)05101520253035404550556065707580859095100

Peptides detected in this lncRNA

>peptide 1 (159 aa)
TPISDYHFIKSTINNQIYWSKTRTTVTQNHKDTQTQTQLKLLSIIINPNQRHQALVSPASITTVTTTRVTTVTTTTITTVSATAIATATATAISTAAAIA
STATATVVSPSTTATTTTITTSETTASTTTTAGAGLSFVDSDVTAVKVLAVHSCDRIFH*

>peptide 2 (59 aa)
MLRPSRSWPFIPAIASFIDCSEAKVTNPNPLDLPVSRSLITCTQKHDASDPKQKKKHEN*

Sequence

>CNT0000217
ATACTCCAATTTCTGATTATCATTTCATTAAATCGACTATAAACAACCAGATATATTGGTCAAAAACAAGAACCACGGTGACACAAAACCATAAAGATAC
TCAAACTCAAACACAACTAAAATTACTGAGCATAATCATAAACCCTAATCAACGACATCAAGCCCTAGTTTCTCCAGCCTCCATCACCACCGTCACCACC
ACGAGAGTAACCACGGTCACCACCACCACCATAACCACGGTCTCTGCCACCGCCATAGCCACCGCCACCGCCACCGCCATATCCACCGCCGCCGCCATAG
CCTCCACCGCCACCGCTACGGTTGTATCCCCCTCCACCACCGCGACCACCACCACCATCACCACTTCCGAAACCACCGCCTCCACCACCACCACGGCTGG
CGCGGGTCTGAGCTTCGTTGACAGTGATGTTACGGCCGTCAAGGTCCTGGCCGTTCATTCCTGCGATCGCATCTTTCATTGACTGCTCTGAGGCGAAGGT
CACAAATCCGAATCCTCTGGACCTTCCAGTCTCACGGTCGTTGATAACCTGCACACAAAAACACGATGCATCAGATCCAAAGCAAAAGAAAAAACACGAA
AACTAACGACAGAACCGAATAGAAACCGATCGATCTTCGCCTTTGGTGAAAGGAAGAAGATGAACGTACCTATTGGCGTGAGTAATAAAAGAATCATATA
GTAACACAAGTATCATATCATAGATCAAGTAACGCAAATAGATCAGAGATCACAGATCAGAAGAGGATCGAGAAAAAATCCGAATCCGAATCGTGTGAGA
TCAGTTGCGGTGCCTGCATCAAACGGACCTTCGATTCAACGATGTCGCCGTAGATTGAAAAGGCTTTCTCGAGGGCATCGTTGCCGGTGACCCAAGCAAG
CCCACCAACAAAGCAACGGAACTCAACATCTGCAGAAGCCATTGAAAAATAGTAGAAATTTGCAACAGCTAGAGTGATTAGAGGGATAAGATAAG

lncRNA-RNA interactions

Number of interactions: 70

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G34490.1 Uncharacterized protein protein coding CNT0000217 197 116 CDS Trans
GLYMA04G01421.1 Uncharacterized protein protein coding CNT0000217 272 178 CDS_UTR Trans
GLYMA04G01421.1 Uncharacterized protein protein coding CNT0000217 375 528 CDS Trans
GLYMA04G01421.1 Uncharacterized protein protein coding CNT0000217 375 560 CDS Trans
GLYMA06G01471.1 Uncharacterized protein protein coding CNT0000217 254 140 CDS_UTR Trans
GLYMA06G01471.2 Uncharacterized protein protein coding CNT0000217 254 140 CDS_UTR Trans
GLYMA06G01471.2 Uncharacterized protein protein coding CNT0000217 100 117 CDS Trans
GLYMA06G01471.2 Uncharacterized protein protein coding CNT0000217 96 108 CDS Trans
GLYMA06G01471.2 Uncharacterized protein protein coding CNT0000217 96 95 CDS Trans
GLYMA06G01471.2 Uncharacterized protein protein coding CNT0000217 207 192 CDS Trans
GLYMA11G11290.5 Uncharacterized protein protein coding CNT0000217 129 125 CDS Trans
GLYMA11G11290.5 Uncharacterized protein protein coding CNT0000217 102 106 CDS Trans
GLYMA11G11290.5 Uncharacterized protein protein coding CNT0000217 131 80 CDS Trans
GLYMA11G12471.1 Uncharacterized protein protein coding CNT0000217 1890 969 CDS_UTR Cis
GLYMA11G12480.1 Uncharacterized protein protein coding CNT0000217 839 579 CDS_UTR Cis
GLYMA11G12490.1 Uncharacterized protein protein coding CNT0000217 276 137 CDS_UTR Cis
GLYMA11G12490.1 Uncharacterized protein protein coding CNT0000217 545 311 CDS Cis
GLYMA11G12505.1 Uncharacterized protein protein coding CNT0000217 1932 821 CDS_UTR Cis
GLYMA12G03470.10 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.11 Uncharacterized protein protein coding CNT0000217 109 80 CDS Trans
GLYMA12G03470.11 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.11 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.11 Uncharacterized protein protein coding CNT0000217 98 53 CDS Trans
GLYMA12G03470.11 Uncharacterized protein protein coding CNT0000217 92 102 CDS Trans
GLYMA12G03470.11 Uncharacterized protein protein coding CNT0000217 128 106 CDS Trans
GLYMA12G03470.11 Uncharacterized protein protein coding CNT0000217 98 106 CDS Trans
GLYMA12G03470.13 Uncharacterized protein protein coding CNT0000217 109 80 CDS Trans
GLYMA12G03470.13 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.13 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.13 Uncharacterized protein protein coding CNT0000217 98 53 CDS Trans
GLYMA12G03470.13 Uncharacterized protein protein coding CNT0000217 92 102 CDS Trans
GLYMA12G03470.13 Uncharacterized protein protein coding CNT0000217 128 106 CDS Trans
GLYMA12G03470.13 Uncharacterized protein protein coding CNT0000217 98 106 CDS Trans
GLYMA12G03470.14 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.14 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.14 Uncharacterized protein protein coding CNT0000217 92 102 CDS Trans
GLYMA12G03470.14 Uncharacterized protein protein coding CNT0000217 128 106 CDS Trans
GLYMA12G03470.14 Uncharacterized protein protein coding CNT0000217 98 106 CDS Trans
GLYMA12G03470.14 Uncharacterized protein protein coding CNT0000217 114 66 CDS Trans
GLYMA12G03470.19 Uncharacterized protein protein coding CNT0000217 109 80 CDS Trans
GLYMA12G03470.19 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.2 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.2 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.2 Uncharacterized protein protein coding CNT0000217 92 102 CDS Trans
GLYMA12G03470.2 Uncharacterized protein protein coding CNT0000217 128 106 CDS Trans
GLYMA12G03470.2 Uncharacterized protein protein coding CNT0000217 98 106 CDS Trans
GLYMA12G03470.2 Uncharacterized protein protein coding CNT0000217 114 66 CDS Trans
GLYMA12G03470.21 Uncharacterized protein protein coding CNT0000217 109 80 CDS Trans
GLYMA12G03470.21 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.21 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.21 Uncharacterized protein protein coding CNT0000217 92 102 CDS Trans
GLYMA12G03470.21 Uncharacterized protein protein coding CNT0000217 128 106 CDS Trans
GLYMA12G03470.21 Uncharacterized protein protein coding CNT0000217 98 106 CDS Trans
GLYMA12G03470.22 Uncharacterized protein protein coding CNT0000217 109 80 CDS Trans
GLYMA12G03470.22 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.22 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.22 Uncharacterized protein protein coding CNT0000217 98 53 CDS Trans
GLYMA12G03470.22 Uncharacterized protein protein coding CNT0000217 92 102 CDS Trans
GLYMA12G03470.22 Uncharacterized protein protein coding CNT0000217 128 106 CDS Trans
GLYMA12G03470.22 Uncharacterized protein protein coding CNT0000217 98 106 CDS Trans
GLYMA12G03470.7 Uncharacterized protein protein coding CNT0000217 109 80 CDS Trans
GLYMA12G03470.7 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.8 Uncharacterized protein protein coding CNT0000217 127 104 CDS Trans
GLYMA12G03470.8 Uncharacterized protein protein coding CNT0000217 139 115 CDS Trans
GLYMA12G03470.8 Uncharacterized protein protein coding CNT0000217 92 102 CDS Trans
GLYMA12G03470.8 Uncharacterized protein protein coding CNT0000217 128 106 CDS Trans
GLYMA12G03470.8 Uncharacterized protein protein coding CNT0000217 98 106 CDS Trans
GLYMA12G03470.8 Uncharacterized protein protein coding CNT0000217 114 66 CDS Trans
GLYMA12G03470.8 Uncharacterized protein protein coding CNT0000217 108 66 CDS Trans
GLYMA12G04701.2 Uncharacterized protein protein coding CNT0000217 1401 955 CDS_UTR Trans