Detailed information on CNT0000235 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LH39|PHSD_ARATH, E-value = 4e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000235

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MCLASLRTFFVSGAVILACFILCPILLQAKNKNWILFEEEPPSLHSTS*

>peptide 2 (30 aa)
KLFKRNVSNIFLTLSFKDFFQIMNFGRLDR*

>peptide 3 (64 aa)
MEHFVLCHWSYLLVVPQFLICCRNAFLSLQLYRPYRVPLSTFFVRLLPYCLFLLCAWLLCERSL*

>peptide 4 (38 aa)
MSKMGMLPYLFATRSKYGAFCSLPLELSSCRSSIPYML*

Sequence

>CNT0000235
AAACTTTTCAAGAGAAATGTTAGTAATATTTTTTTAACACTCTCCTTTAAAGATTTTTTTCAAATTATGAATTTTGGTAGGTTGGATAGATAGGAGTTAT
CAAACCTCTATTACCAGGTGAACATTAATGGTTTGGTGTTAAATTAAATAATAGAAACTAACACTGTTTGCCACCACCTTCCCTGTCTTTCATTGTTTGG
CTGCACTTTATTTGAATTACCCTGTCCTTCACATCGTTGGCTTTTCTGCCGTTCCTCATAAGGTTAGTACCCTTGCGGGAGAGGTTGAAGATCCAAGTAA
GACCTTCCACAAAGCACTTGTTGGAGGACTAGTTTTGGTGGTCTCCTCCTATTTGATTCCATTTCTGGCGGTAACAGGTGCTTTGCGGGTTTGTTCGAAG
CTGAAATGAGCAAGATGGGAATGCTTCCATATCTATTTGCTACAAGGTCTAAGTATGGAGCATTTTGTTCTCTGCCACTGGAGTTATCTTCTTGTCGTTC
CTCAATTCCTTATATGCTGTAGGAATGCCTTCTTGAGTTTGCAGCTTTATAGACCTTACAGAGTTCCACTGTCAACATTTTTTGTTCGCCTCCTGCCTTA
TTGCTTATTCTTGTTATGTGCTTGGCTTCTTTGCGAACGTTCTTTGTGAGTGGAGCAGTAATTCTGGCGTGCTTTATTCTCTGCCCTATCTTGCTTCAAG
CCAAAAATAAGAATTGGATTCTGTTTGAAGAAGAACCACCTTCCTTACATTCCACTAGCTGACCCAGAGAATAAGGGTGTTGAGCTTCTTGTGAGCTCAC
CATTTGCTAGTGTGGAAGAACAATTGTCTTTAATGCAAAGTGATTCTAAACCAAGCTAGCGGGATCTTTTCTTGGACATCAATTTTGACGACAATTCAGC
ACAAGCATACGACGTGTTTGGCTGTCTTGGACATTGCTGAATGCTGATCACTAGAGCTTATTAATTTCAATTCGCAGAGGTTGAACTCGGGGATGGCTGA
ACATGGCATAACCAAATCTGTGTTGTAACTTATATACGATTACCATCAATTATACAAAGAATTGAGTTATTTTCATCCGTTGAAAATATTTTCACCCGTA
GAACTACTCAATTATTCATTGCCAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G00330.1 Uncharacterized protein protein coding CNT0000235 814 296 CDS_UTR Cis