Detailed information on CNT0000240 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LV33|BGL44_ARATH, E-value = 4e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000240

Peptides detected in this lncRNA

>peptide 1 (55 aa)
NRIGILKNYSHTHSTSFAFDKPSIPLKHSPSISFQVSRRSSACSRFFLSFFLGSL*

>peptide 2 (39 aa)
MQVVDPHPIDAPSVLLTALLVILLLSRLHTTSYLLMLQR*

>peptide 3 (96 aa)
MQKYALGNLVIVLSTGGYASGGSPPNRRSKCFANCTAGDSTSEPVTHHLILAHAAAVKVYREKFQKTPWNRMTLIWSIAFVHPLHDKMQILLHKRN*

>peptide 4 (91 aa)
MILKLSVYPNLPNGSRSKTRDLDSEELLEQLPALQQLLYQLFARVLASLSNSHENVIFELIGSIWIIISISLSPANLIYLYVFSIIFSYFL*

>peptide 5 (62 aa)
MFLLNEWFKMMKAINFIIHSLKNWYFDFANMQDFANYAEVCFREFGDSVKHWRLCKWWIPTQ*

Sequence

>CNT0000240
GGAATAGAATAGGAATTTTGAAAAATTACTCACACACTCACTCGACCTCCTTTGCTTTCGACAAACCCTCCATTCCTCTCAAACACTCACCTTCAATTTC
GTTTCAGGTATCGAGACGATCCAGTGCTTGCTCCAGGTTCTTTCTTTCCTTCTTCCTTGGATCACTCTAACTTTCACGACATTGTCAGCAAGCACGTCCA
GTTCTACGCCCCATGATCTTTACACTGAAGAGTCCAGTAGGCCTCAGAAACGGTTTTCTTCTGCTAACCACTTCTTTTTTCTTATGAATTTCCCTTCAAG
ATCTTAATAATACGTGTCACTCTTCAGATCAGTGTCAATTATCAATCACATAAACTGTACTCTTATCAATATGTTTTTACTTAATGAATGGTTTAAGATG
ATGAAAGCAATTAATTTTATTATTCACTCCCTGAAGAATTGGTACTTTGATTTTGCAAACATGCAAGATTTTGCAAATTATGCAGAAGTATGCTTTAGGG
AATTTGGTGATAGTGTTAAGCACTGGAGGTTATGCAAGTGGTGGATCCCCACCCAATAGACGCTCCAAGTGTTTTGCTAACTGCACTGCTGGTGATTCTA
CTTCTGAGCCGGTTACACACCACCTCATACTTGCTCATGCTGCAGCGGTAAAAGTCTACAGGGAGAAGTTCCAGAAAACACCTTGGAATAGGATGACATT
AATTTGGAGCATAGCCTTTGTACATCCTTTGCACGATAAAATGCAAATTTTATTGCATAAGAGAAATTAATTTACAACTTATGTTGCTGATACCTCATTT
CAGCCCCAATTATCATAGAAAATAAGTTATGAAGTAGAAGATAAGAACCGTGAGCTGAGGTATACATGCACTGCACAAAGCTAGCTAGCACAATCTAAGA
GAGCCGATCCCAACTTGGGATTGCTCTGCCTGGGTACTACATATGCATCATTTTTGGAAGAAAGACTTGAATGCTTTCAGATTCTGAAGTATGATATTGA
AGCTGAGCGTCTACCCAAACCTGCCGAACGGCAGTAGAAGCAAGACCAGAGATTTGGATAGTGAGGAGCTATTGGAGCAGTTGCCTGCTTTGCAGCAACT
GTTGTATCAACTTTTTGCCAGAGTCTTGGCATCACTTAGCAATAGTCATGAAAATGTAATTTTTGAGCTAATCGGTTCAATTTGGATCATTATATCAATA
TCACTATCACCAGCCAATTTAATATATTTGTATGTTTTTTCAATAATTTTTTCATACTTTCTTTAATTATGAGATATATGTCCCATTTGTATCAATTATT
ATTGCAACACTCTCAAAGTTTATGTATTATTCCAAATTCTAAATTCTAACATTTAGCAAATAAATTTACTTAATCAAATCATAATTTTGCTATTAAAGAA
AAAAGCAAATATAATGCTGAACAACCCATACGCACGGCACACCAGTGTCAG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G02200.1 Uncharacterized protein protein coding CNT0000240 148 60 CDS Trans
GLYMA08G21860.1 Uncharacterized protein protein coding CNT0000240 146 60 CDS Trans