Detailed information on CNT0000241 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SKT3|SCAM1_ARATH, E-value = 2e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000241

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.6192.2350.254000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (34 aa)
ELLISLCKILALMPSSRLCTYLNSGGGYNICIRV*

>peptide 2 (34 aa)
MQSFICHILAELEEGFLVDIMMPSMLNWVLGGNR*

>peptide 3 (55 aa)
MMTQKLRLPLNKNPSPRLLLNPLSLSLLKEHWKCSLRKLKALIPSSRALLSWGNY*

Sequence

>CNT0000241
GAATTATTGATTTCCTTATGTAAAATATTAGCATTAATGCCTTCATCTAGGTTGTGTACTTATTTAAATTCTGGTGGAGGATATAACATTTGCATTAGGG
TTTGAACATTCTTAATGTGTATTAGCAAGGGAATCTTTGCATTATGATGACACAAAAATTGAGACTTCCATTGAACAAAAACCCAAGCCCAAGACTGTTG
CTAAACCCATTGTCGCTGAGCTTGCTCAAAGAACATTGGAAGTGTTCCCTCCGCAAACTCAAGGCTCTCATCCCTTCCTCCAGAGCCTTATTATCGTGGG
GAAACTATTGACATCCCCCTTGATAATGCAAAGTTTCATATGCCACATCCTGGCAGAGTTGGAGGAAGGTTTTTTGGTTGACATCATGATGCCTTCTATG
TTGAACTGGGTCTTAGGTGGCAATAGGTAACATTTAGATCCCATTTTTCTTTGCTTTGCTCATAGACTTTCTTTCATGTG