Detailed information on CNT0000246 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C9Z9|ELD1_ARATH, E-value = 5e-26

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000246

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)10.9476.4547.6931.95410.86511.5069.84314.3378.53511.7259.51813.72414.3651.8392.478leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213141516

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MARRHHRSNSPLVPAWVPPLLPRHGAFSPFPSLLP*

>peptide 2 (148 aa)
MPVSNHQLYAPLRPNPSSSSSSFSSHSFTSKILLLLTILPVSLAAIAFILQWRGGITDPTALSSPRGSHHYFPGMEPSPLSHLSSHNSNSHHSDCVNLGR
TASPSFPYYHNWKLDFEASLTPKICVTTSTSAGLEQILPWLSHQLLYGT

Sequence

>CNT0000246
TAAAATAAACAACTTATCTAATAAATCATCACTAACAAATTCACTCTGAGATTTGGACTACAGTAATAAATTTCCAATTTTTTAAAAAGGAAAGATGTAC
ACACTTGAGGAGAAACACCTTGACAGTTGACACCCTCCTTCCTCACCAGTCACAGTTTGTTGTTGTCGTCTCCTTCCGCAACCGTGTTGGGTGCGCCAAC
CACCGCATCCACCACCATGCCGGTCTCCAACCACCAGCTCTACGCTCCTCTCCGTCCAAACCCATCTTCTTCTTCCTCCTCCTTCTCTTCCCATTCTTTT
ACTTCAAAGATCCTTCTCCTCCTGACCATCCTCCCGGTGTCTTTAGCAGCCATTGCGTTCATCCTCCAATGGCGCGGCGGCATCACCGATCCAACAGCCC
TCTCGTCCCCGCGTGGGTCCCACCACTACTTCCCCGGCATGGAGCCTTCTCCCCTTTCCCATCTCTCCTCCCATAATTCTAACTCCCATCATTCCGACTG
CGTCAATCTTGGCCGCACCGCTTCTCCTTCGTTTCCTTATTACCACAATTGGAAGCTCGACTTTGAGGCCTCTCTCACCCCTAAGATCTGTGTTACGACT
AGTACATCAGCAGGGCTTGAGCAGATTCTACCTTGGTTGTCACACCAATTACTTTATGGTACAAC