Detailed information on CNT0000247 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P68428|H32_WHEAT, E-value = 2e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000247

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)20.43820.45423.202549.09745.1941.02463.58341.855105.487274.878162.764156.88187.829583.485449.118leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)050100150200250300350400450500550600650

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MKMIGGCGWCFCFSDSFFYSIDGVVREGRFSAGSSINWDIGKYCRVSVTVFSSFKKIGL*

>peptide 2 (34 aa)
MTHMSKNQLQANFLKGRKHSHGHLAVFACITING*

>peptide 3 (67 aa)
MGNTVKHLHSLTTLSIEKKKKRNLNNKNTTRSNPSSSSSSQPPPQARSPRILLASWISLGIMVTRLA*

>peptide 4 (36 aa)
MSKLSRFSASSVILYSNPLISKPRREVSLISTTNLA*

>peptide 5 (34 aa)
MYVLECFCFSFYLRDVAATLETVLDNIQLPSNLV*

Sequence

>CNT0000247
TGAAATTCAACAAAATTTGAAGCCAAAACCAACATAGGTAATTAAGTATTTATGAGCAAATTGAGTAGATTTTCTGCCAGTTCTGTAATACTATATTCAA
ATCCTCTCATTTCAAAACCAAGAAGGGAGGTCAGTTTAATTAGCACAACAAACTTAGCTTAAACGAGATTAGATGGCAACTGAATGTTGTCCAATACAAT
TCCAAAGTGACTACATCCCGTAGGTAAAAACTAAAAACAGAAACATTATGACACACATGTCCAAAAATCAATTACAAGCCAATTTTCTAAAAGGAAGAAA
ACACAGTCACGGACACTTGGCAGTATTTGCCTGTATCACAATTAATGGGTAATACCGTAAAACACCTACACTCCCTAACAACCCTATCCATTGAAAAAAA
AAAAAAAAGGAATCTGAACAACAAAAACACCACCCGCAGCAACCCATCTTCATCTTCATCTTCACAACCACCACCTCAAGCACGTTCACCGCGAATCCTT
CTTGCCAGCTGGATATCCTTGGGCATAATGGTTACCCGCTTAGCGTGAATGGCACACAGGTTAGTGTCCTCAAAGAGCCCAACAAGGTATGCCTCAGCAG
CTTCTTGCAATAAGGATTCGTGGTGAGCGTGCTTGAGTTGGTGGTTGGAAAGATGAAGATGATTGGTGGCTGCGGTTGGTGTTTTTGTTTTTCAGATTCC
TTTTTTTATTCAATAGATGGGGTTGTTAGGGAGGGTAGGTTTTCTGCTGGTAGTAGCATTAATTGGGATATAGGCAAATACTGCCGAGTGTCCGTGACTG
TGTTTTCTTCCTTTAAGAAAATTGGCTTGTAATTGATTTTTGGACATATGTATGTGTTAGAATGCTTCTGTTTTAGTTTTTACCTGCGGGATGTTGCAGC
CACTTTAGAAACTGTATTGGACAACATTCAGTTGCCATCTAATCTCGTTTAAGTTAGTTTGTTGGGTTGCCTCGTTCTTACTCGGGATTTCCATCCCAGT
TTGGTTACTGGGTTTCTTATTTATTGTTCACTGTACATTATTTATGGATTACCTCCATAAAAGAAAAGAGCGTTAATCGAAGCTGTCAGATTTAAAAGTT
AATATAATTTTTAGTTTAAATCTAAGTTTCTAGTTATGATTGTGTATATAGGCAGAGGAAGAAATATGTGCATGAAGAAAAAGTTAGAAAGATGATCTGG
TGAAGGATTGTCAGAAAGCTCAATGATAATTAGTGTCATGTTTCAGGTAGAATGATACTTTGATAAACCAAGTATAGGATGCTTTTGGGATTTGTATTGC
ATTTGATTAACTTTTTTATTAAT