Detailed information on CNT0000254 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004714, E-value = 7e-12 (V. vinifera)
CNT0044074, E-value = 2e-15 (A. thaliana)
CNT0035175, E-value = 2e-18 (P. patens)
CNT0021574, E-value = 4e-13 (Z. mays)
CNT0022384, E-value = 7e-12 (A. trichopoda)
CNT0026952, E-value = 4e-13 (O. sativa)
CNT0017109, E-value = 1e-16 (S. tuberosum)
CNT0038248, E-value = 1e-07 (S. moellendorffii)

Expression of CNT0000254

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LKTGSSSCTHCLSLFFSSFLQRKHSETQIGTPSTSIQ*

>peptide 2 (32 aa)
MVRMRSNSKRVTLGVNGSLLTHIYKVVSTTMQ*

>peptide 3 (38 aa)
MSTDFAFANIIANLQHDICTVSNSGYFVDNSISCLPLN*

>peptide 4 (69 aa)
MTFNLNKLLHTTIVLMLVEKEKKIDTGMQQMRLDFFISMPICCKENELHLNIIPHCRASLEERVECKEG*

Sequence

>CNT0000254
CTTAAAACTGGCAGCAGCAGCTGCACGCATTGCTTGAGCCTTTTCTTCAGCAGCTTTCTTCAAAGGAAGCACTCTGAAACACAAATAGGAACCCCATCAA
CCAGCATTCAGTAAAAGTCTCATTTGATAAAAAAACAAAAAACAAAACCATCTACCATGCAAATTCAAAGAGTTCAGAGGGCATAAGGACACACCCACAG
CGAATCCGAGAGTCTGTCATTAGCCTACTACCTGCTGACTCATGTTGCTTTCAAGGATTATCAATAGAAATCATTTCTCTGTCTAGGAAAAAGTTCAATA
TTAATGCAAATGAGGAACCAAACTAAAGCAGTACATATACACACAAAGGTAAGAACTCAGCCCAGTCGGATGTACCAAATTTGAATAACAAAATCAAAAG
GATTGGCTGGAAAGATGACATTCAATTTGAACAAATTGTTGCATACAACAATTGTGCTGATGCTGGTGGAGAAAGAAAAAAAAATAGACACTGGCATGCA
ACAAATGCGACTTGATTTCTTCATCTCTATGCCTATTTGTTGTAAAGAAAATGAGCTACATTTAAATATAATTCCCCACTGTAGGGCATCCTTGGAAGAG
AGGGTAGAATGTAAGGAAGGTTAACAAAGGAAATATTGCACTTGCACTCCCAGTTAACCGGTAGATTCTGTAGAGCCAAGAGGGTGGGGAAAAATCTCAT
TTGAAAAATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAGACCCACTTACTCCAAGCGTAAC
TTTTTTAGAGTTACTCCCCATCCTCATCATTCATTTTCTTAAAATCTAATGGTTGTAATAAGTAACTAATTTTAACCATTAGATCTTAAAAAAATGAATG
GTGAGGATGAGAAGTAACTCTAAAAGAGTTACTCTTGGTGTAAATGGATCCCTCCTCACACATATATATAAAGTTGTATCAACTACCATGCAATGATTGA
TTATTTGCATCCCAAATTCTCAACCAATATATTTCCGCCTGTGTCAATTTAAGCTAAACAACCTTAACATTTTTCTCCTTTTAACACTATCAACCTGAAG
GCCATAGATAGAAGAATAGCAAAAATCAAAATTCATTCTAAGCAGCAGCATGGATCCCATGAGTTTCGCAGTAGATCAGTAGATGGTATCTTAGTTCCTA
GATAAGTACTTAATATAAATTAAGACATCAACATAATAACATGTATAGGTTCATTGAATTCCTTTGACAAAATATTGAAATTTCAACTGATAAAAGACAC
TTGGATTTCAGTAATTAGTGTTACATAAAGCACAACATTGAATACTGTCATCAATCATCACACTTTTGAGGTTGTTAATCACCCAGTAAGTTTCGCAGTA
GATCAGTAGATAGTATCCTAGTTCCTAGATAAGTACTTACTATAAATTAAGACATTAACATAGTAACATGTATAGCTTTATTGAATTCCTTTGACAAAAT
ATTGAAATTTCAACTGATAAAAGACACTTGGATTTCAGTAGCTTCAGTAATTAGTGTTACATAAAGAACAACATTGAATACTGTCATCAATCATCACACT
TTTGAGGCTGTTAATCAACCCTACCCCATATTCAGACTAGTGACTTCCAGCATCATCTTTCATATTTCTATGTCAACAGATTTTGCATTTGCCAATATTA
TTGCAAATCTGCAACATGATATTTGTACTGTATCAAATAGTGGATACTTTGTGGATAATTCAATCTCCTGTTTGCCACTAAACTGAAGGAAGCATTACAA
CCATAATTCAATTCAAAAACATGCCTATTAAGAGAAATTAACCAAATATCAGCCTTCTCTATTTTGTGTGCTCAACATACATGATAAATGATCAGAAAAA
CTAAATGAACTATTAGATTTCCATGTTAAGAATGACATAGATACAAATACAGATTTCCAGTCATAAAACCTCCACAAAAGCATTCATATGACGTGTATCA
TTGTTTGATGTGACAGACCAACTCGGCTTCCAGGCTAGGAGATCCAAAAGCATGACCAGTGTGAAAATTAACAAATCAAATAAGTAAAAATATGATGGGG
AAGGATGCTGCTTATGTGAAAACATCACATGCAAATAAAATGACAGAAAGCTAAAAGGAATATCCTATCAAAATGCAAAGCGGCACCTTTCATTCAATAG
GTGCTCTTGTTCCTTGC

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G10911.1 Uncharacterized protein protein coding CNT0000254 770 281 CDS Cis
GLYMA11G10911.1 Uncharacterized protein protein coding CNT0000254 904 323 CDS Cis
GLYMA11G10911.2 Uncharacterized protein protein coding CNT0000254 770 281 CDS Cis
GLYMA11G10911.2 Uncharacterized protein protein coding CNT0000254 904 323 CDS Cis
GLYMA11G10981.1 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.1 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA11G10981.2 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.2 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA11G10981.3 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.3 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA11G10981.4 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.4 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA11G10981.5 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.5 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA11G10981.6 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.6 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA11G10981.7 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.7 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA11G10981.8 Uncharacterized protein protein coding CNT0000254 759 281 CDS Trans
GLYMA11G10981.8 Uncharacterized protein protein coding CNT0000254 874 324 CDS Trans
GLYMA12G03180.1 Uncharacterized protein protein coding CNT0000254 544 285 CDS Trans
GLYMA12G03180.1 Uncharacterized protein protein coding CNT0000254 794 331 CDS Trans