Detailed information on CNT0000256 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SVL6|CRPM2_ARATH, E-value = 3e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016429, E-value = 2e-07 (S. tuberosum)

Expression of CNT0000256

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)25.42922.74926.5270.4736.91339.91927.18519.5951.3783.3062.1212.4171.3920.5941.32leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.54042.5

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MWKRRGFEEEAVQLINSDFRDLSLAGIGFGASFFGFFAAIAAIRWTMKSIWSVDKVHSTGKILLKLRVIC*

Sequence

>CNT0000256
TCTTGACTACACTTAATAAAAAATACATGTAGATAGATACCGGAATTTTGTTGGTTGTAGGAGATTTCTTACTCGATATTGGAAAAGAAGAGTTTAGAGA
AAGCAAGAGCAGCTGGTGTATCTATCTCTCTGTGTTCATTATTGGTAAAGCATTAATCTCCACGTGGCCTTTCCTTATCATGTGCAATTGTTGTGCATAT
AGATAAGCACATCCAAATGTCTGCTTTGACTTAGTTTCATACACTCCCTCCTGTTTGATTACGAAAATGTGGAAGAGAAGGGGATTTGAAGAAGAAGCAG
TTCAATTGATAAACTCAGATTTCAGAGACCTAAGTCTAGCTGGCATAGGCTTTGGAGCCTCTTTCTTCGGATTCTTTGCTGCCATTGCTGCTATTAGGTG
GACGATGAAATCAATTTGGAGTGTGGATAAGGTTCATTCGACAGGCAAGATATTATTAAAGCTAAGAGTTATCTGTTGATTTTGGATCGTACAAACTGGA
AGACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCTTCATTAATTTTCGACGTCTTCAGGCGATTAGCTTGTCACGCTTTATT
GTTATCAATTTTGCACCATCATTTTTCTGTAATAGTAATTTTCCTTTTTATTATCATTCTACTTATGCAGGGGAGAGCTTGGAAAATGGATTGCTGCAGT
TGCTGTTGTATTACGACTTTTCATTCCTAGACACTTCCCTGATTGGCTGGAATTGCCAGGTGCTTTGATTCTTCTTATCGTCGTAGCTCCTTCTCTAATT
GCAAGCACTTTTAGAGACAACATTGTTGGGGTGGTGGTGTGCCTCATCATTGCATGCTATTTGCTGCAAGAACACATTCGGGCTTCTGGTGGTTTCAGAA
ACTCCTTCACTAAAGCTCACGGCGTATCAAATTCCATCGGCATAATACTTCTGTTGGTTTATCCCATCTGGGCACTGGTTGTCATACTTTTTTAGGCACC
ACCATTTGGACTTGTTGATTCGTGTGAATTAAACCAATTGTTTTCTGTACCATTCATTTGTTGGAACTTGATATCTATAAACACCCCGCCATTGTTTTGC
GATTCATCTTTGTCCTAAAGTTAGCATGTGTAAAAAAGTGGAATAAAATCTCAGTTGTAGTCTTCTGGTTTCGTAGAATGTAAAAAAAACAAAATATGAA
GAGGATTGGTGTGGTGTCTTTCTAGCTGTCGTGTATTCACAAATCATGTGTAATTTGGGAAATCATTGTATTTTTACCTGTGGGGTATAATATAAATTTA
CATTTGTTGTTGCTCTGAGTTATTACAGCATTTTGTTTCCCAGCAAATGCAATCCTAGCAACTATAACAGAAT