Detailed information on CNT0000259 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000259

Peptides detected in this lncRNA

>peptide 1 (54 aa)
SPLEHLNNLLCSSFNAFQVFCQNPLLVRTSLLCFSEACREEKEHGQIKETTSVK*

>peptide 2 (30 aa)
MDKSKKQHLLSRRQRRNNNYTYKNMAVSQF*

Sequence

>CNT0000259
GTCTCCCCTGGAGCACTTGAACAATCTCCTCTGCTCTAGTTTCAATGCCTTTCAGGTATTCTGTCAGAATCCGCTGTTGGTAAGAACCTCCCTCCTTTGT
TTTTCAGAAGCATGCAGAGAGGAGAAAGAGCATGGACAAATCAAAGAAACAACATCTGTTAAGTAGAAGACAAAGAAGGAATAATAACTACACGTATAAA
AACATGGCTGTCTCACAGTTCTAATCAAAACGCGTTCAATTCGTTTCTTTAAG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G12070.1 Uncharacterized protein protein coding CNT0000259 710 253 CDS_UTR Cis
GLYMA12G04280.1 Uncharacterized protein protein coding CNT0000259 592 255 CDS Trans