Detailed information on CNT0000261 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000261

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MAMLTQKGFGPANYSNKTHKRHLPVLLTLLFQPTESSDALSM

Sequence

>CNT0000261
ACCATATTTCCATGTTGGTAAATAACAACAAGATCTACAATAAGCACTATAAGCATAATTATATACGTAACCTCATCTACAAGTAATACTTCTTCATTTT
AATGCATAACAAAAGAAACAAAAATGGAAGCAAGAAATCAAAATTGGCTCACTTAATTTCCTGTTAATGCATTATGAGAGGAGGTATCACAAACAATGGC
AATGCTAACGCAAAAGGGTTTTGGTCCAGCTAATTATTCAAACAAAACCCACAAAAGGCATTTACCAGTATTATTGACTTTGTTGTTCCAGCCAACTGAA
AGTTCTGATGCCCTCTCGATGCC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G12920.1 Uncharacterized protein protein coding CNT0000261 868 323 CDS Cis
GLYMA11G12920.2 Uncharacterized protein protein coding CNT0000261 868 323 CDS Cis
GLYMA12G05050.1 Uncharacterized protein protein coding CNT0000261 392 187 CDS Trans
GLYMA12G05050.3 Uncharacterized protein protein coding CNT0000261 392 187 CDS Trans