Detailed information on CNT0000269 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P10290|MYBC_MAIZE, E-value = 4e-31

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000269

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000000007.3518.87810.189.4081.9700leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MAPPRNVETAKKTNNRGAWTAEEDQKLAQCIEIHGAKKWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRTNRQ*

>peptide 2 (48 aa)
MTVPAKSPCYSTTRADSPINNAITKLFINIIVEVSLSLSYMHGTPEEC*

Sequence

>CNT0000269
CCTTGAAGCACTCTTCCATTTTAAATTACCCCTGAATGAATGACCAGCAATGATGTGCTCATTGACCTTTCAAGCCCTACAACTACAATGAATGACTGTT
CCCGCCAAGTCACCATGTTATAGTACTACACGTGCTGACTCCCCCATAAATAATGCCATAACCAAACTCTTTATCAACATCATAGTTGAAGTGTCTCTAT
CCCTCTCGTATATGCATGGCACCCCCGAGGAATGTTGAAACTGCTAAGAAAACAAACAACAGAGGAGCATGGACCGCGGAGGAAGATCAGAAGCTAGCCC
AGTGCATTGAAATTCACGGTGCAAAGAAATGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTA
TTTGAGACCAAATATCAAGAGGGGCAACATATCAGTTGAGGAAGAGGATTTGATTATTAGGCTTCACAAACTGCTGGGAAACAGGACGAACAGACAATGA
AATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCACAAAAAGGTGAAACCTGAAACTTCAACGGCACAAACAACGCATACGACTCAGAAT
ACCGAGGAAAGAGCAGCGGTAGAGAATAAAGAGGGCACTGATGATGGGAGTGGGGACTCAGAAGTTAACTTTGATGTGAACGAATTCTTCAACTTCTCCA
TTGAATCTGGACCCTTTGCGTTGGATTGGATGATCTAAAACTTGATGAGGAATTGATAATTACGTGTCTCTCTTAATTTATTAGTGTGAGCTTGTTTTTA
TATACTTGTTATGTGGTCATTGTTAAGTGGAGTCCTAGCAATAGCAATACATGTGTGAGTTCCATTAAATAATTTGAACTCTCATCATTGTATTTAGTGG
AACTTACATATATATAATTAAGTGTAACAATAATAATGTGTTCATGAGAGTACTGAATAAAGTGTGTTAG