Detailed information on CNT0000276 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O22160|TL15A_ARATH, E-value = 3e-47

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000276

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)19.77917.921.3272.3749.52173.55962.48246.1277.5210.1167.089.7515.4443.9641.202leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)05101520253035404550556065707580

Peptides detected in this lncRNA

>peptide 1 (30 aa)
DSNKSTDSHRQVEGRENEIKMRIICSTEKQ*

>peptide 2 (30 aa)
MLRVIHCSAISIPLLNTHSKTFKCLHRMVS*

>peptide 3 (31 aa)
MVPMTLCRGELHLRVTARYGSCSQRLIVFHL*

>peptide 4 (31 aa)
MPLRGVRDKISSTSLIEHMDIHNSNNKQLRR*

>peptide 5 (116 aa)
MALVLNVSLCSTCKPHLSLSTSNPNKASSTFPLPLPLLGLNIKKSLQPSQKLTFSLGESVSGATLVALLSASFIFVDPALAFKGGGPYGQEVTRGQDLTG
KDFSGKTLIKQDFKTV*

>peptide 6 (29 aa)
MLTWKVHLQQEIHLLRDQILQALTSRMYH*

Sequence

>CNT0000276
GACTCTAATAAGTCCACCGATTCTCATAGACAAGTAGAAGGGAGAGAAAATGAAATCAAAATGAGAATTATTTGTTCCACAGAAAAGCAGTGAAGGAACT
CAGGTAACTCTCATGCTGGGTTGAAATCCATTCACTGTTAATCCTCCATCAACACAAATAACTTGTCCAGTGATGTAAGAGGCAGCAGGCAAAGAAAGGA
AAGTCACCAACGATGACACTTCTTCCGGTTCTGCAATGCCCTTAAGAGGGGTCCGAGACAAAATATCTTCCACAAGTTTAATCGAACACATGGACATTCA
TAATTCTAACAACAAACAATTAAGGAGATGATATGATATGGTGATCCTTTGACCAAGCGGCATTATCCACATACACATGGTACCTATGACACTTTGTCGT
GGTGAGTTGCATCTGCGTGTGACTGCAAGATATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCACTTGTAAACCCCATCTTTCTCTCTCAACCTCCAAT
CCCAACAAAGCTTCTTCTACTTTTCCTCTTCCTCTTCCTCTTCTGGGACTCAACATAAAGAAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGG
GTGAATCCGTGTCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCA
AGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTCAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGGTGTAACTTTATTTGTTATTTTTT
AAACGAGTTTAATTTTGATACATTGTGATCCATGTGGCCATACTCACATTGTGGGATAAGACGTTGTTCTTATCATATATGACAATTCATAATTGGAAGA
CATTCAAATTAAATTATTTTTAAAATTAAGTTGATTTGGCATATGATGATGGGGTCAATCAAATTTGTGATTTTAATCTAAATTTAACTAGTTGATTAAG
CTTGATTGTTGCAGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTC
GGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAATACA
TCTTTTAAGGGATCAAATATTACAGGCGCTGACTTCACGGATGTACCACTAAGAGAAGATCAACGTGAATACCTCTGCAAAGTTGCTGATGGTGAACCCA
ACAACTGGAAATGCTACGCGTGATACATTGTTCTGCAATTAGTATTCCATTGCTGAATACTCACTCCAAGACCTTCAAATGTTTGCATAGAATGGTTTCA
TAGCTAACAAAATACTCCCTTCATGTTGCTGGAATCTTGTATTTACATAGCACCACAATTTAGATTATTTCAAATTTCCATTCCCCATACACACACTTGA
CAATAACATTGTGATGTAATGCTCATAACCAGCCTACCTATGTTATATATTATTATTATTGTAATCATATAGCAAAAATCCTTTCATAAATGGTAGGTAT
AATAATCCACAATGAAGTGGATTGGGAAAGCCAAACATGAATAAG