Detailed information on CNT0000278 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000278

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.3290.9341.337000000000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (88 aa)
TKKKNREKRLELENGSCGSVRNCCCYCCSFLLGWFWILLNFSTFTSVMISRVAGMKLIFLILFRVLRDSLRGIYEALELRDGAISCHS*

>peptide 2 (29 aa)
MTFLISTGAVSHKALFSGAAREGGKGPSI*

>peptide 3 (42 aa)
MEQFLVIHDVSYLNRSSFPQGFIFGCCKGRWKRTEYMRYFHS*

>peptide 4 (84 aa)
MYISPPIVLFNIVYFCFQIRALTCNFFHFYLCCFRAFYFIFLVLICLEICSHSTFLSFVFFGIRIVLQLGLGREIKYDCAVIFFQ

>peptide 5 (52 aa)
MWVSEELLLLLLFIFAGVVLDPTQFLNIHFRHDKQGGWHETHISDIVQSFTG*

Sequence

>CNT0000278
AACAAAAAAAAAAAACAGGGAAAAAAGGCTTGAACTTGAGAATGGATCATGTGGGTCAGTGAGGAATTGTTGTTGTTATTGTTGTTCATTTTTGCTGGGG
TGGTTTTGGATCCTACTCAATTTCTCAACATTCACTTCCGTCATGATAAGCAGGGTGGCTGGCATGAAACTCATATTTCTGATATTGTTCAGAGTTTTAC
GGGATAGTCTACGAGGGATTTATGAGGCCCTTGAATTGAGAGATGGAGCAATTTCTTGTCATTCATGACGTTTCTTATCTCAACCGGAGCAGTTTCCCAC
AAGGCTTTATTTTCGGGTGCTGCAAGGGAAGGTGGAAAAGGACCGAGTATATGAGATACTTTCACTCATAAATACTCAGGTGTATGTATATCTCTCCTCC
AATAGTGCTTTTTAATATTGTTTACTTTTGTTTTCAAATAAGAGCCTTAACTTGCAATTTCTTTCACTTTTACTTGTGTTGTTTTCGTGCATTTTATTTC
ATTTTTCTGGTTTTGATATGTCTGGAAATATGTTCACATAGTACTTTTCTTTCTTTTGTTTTCTTTGGTATACGTATAGTGCTTCAGTTGGGACTTGGAA
GAGAAATAAAATACGACTGTGCTGTGATTTTCTTTCAG