Detailed information on CNT0000280 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VYF4|GATL7_ARATH, E-value = 2e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007843, E-value = 5e-11 (S. tuberosum)

Expression of CNT0000280

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.5021.7532.1270.5970.260.4910.2560.240.9361.072.7931.7790.6592.9971.666leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLAILLYPSLHPSTPSCCFNMGVMVIDLVRWQKIRYGMRIERWMEIQKND*

>peptide 2 (62 aa)
MMGKWGILWLTIPSDYSPVKYEEKKNQLDWKLRRQNQANTKRVMCTSEVRVEGLETLGYLDN*

Sequence

>CNT0000280
AATATAATAAATATTTTAAAGAAGATTTTTGCGAAAATCGCCTTCTTATACTCGAAACCATAAAACAAGATATTTTTAGTTGATATTAGTTGATATCAAG
TATTCAAAGACGTTGTTTTGAAAGACCGCATTTGAATGAAGATCACTTTTTATTTTTACCTCTTCTGGTCTGGTTTTAGTCGTGTGAAAATGTTGTGGCT
GATGAGATTCTAGGGCTTCTTCTTTGTCGCAATGCTCGCCATTCTCCTCTACCCCTCCCTCCATCCTTCCACCCCATCGTGTTGCTTCAACATGGGTGTG
ATGGTCATAGATCTGGTGCGGTGGCAGAAAATCAGGTACGGCATGAGGATAGAGAGGTGGATGGAGATTCAGAAGAACGATTGAATCTACGAATTGGGTT
CTTTGTCGAGACCTGATAGCGACATGCCCTGGACAAGATTGGACTCCAAGAAGCCTTTGTCCTCTTGATGCACTTTGGGCTCCTTATGATTTATTGATGA
ACACGTGCAAAGAGATATTATAAATCATAGGTCCTTGAAGCTTCCCAATATCATTAGATGTAAAGAGCTACATACTTGAGAGTTGTGGTTGCTGAGGTTC
TTCAATCACCTTGCTAGCTACTGCATCTACTGTTAGGGCAAGTGAAGCATTCAATTGAATAACAGAGTTGGCTGGATCCATTTTTCTTTTGCTAATAGAG
TACCTTGAAGCATAGCAAGGATTGATTCATGATGGGCAAGTGGGGGATTTTGTGGTTAACTATACCGTCTGACTATTCACCTGTTAAATATGAAGAAAAG
AAAAACCAACTTGACTGGAAATTAAGACGACAGAACCAGGCAAATACAAAAAGAGTAATGTGCACTTCTGAAGTTCGGGTTGAGGGATTGGAGACCCTGG
GTTATCTTGATAACTAGCAGAGCAAGGAGCACTTTACCGAGGAGGGGATGCTCTAAAGTTTGAATCAGAAGTAAGATTAATTTTTCCCTTCTATTTTGTT
ATAGGAAGCAAGATGTTGATATTATTAAATGCATAATGTGGATTTATATCACTAAATTGAATTATTTGAAATAAGTTAAATATATTTC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA20G14970.1 Uncharacterized protein protein coding CNT0000280 340 176 CDS_UTR Trans