Detailed information on CNT0000288 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000288

Peptides detected in this lncRNA

>peptide 1 (37 aa)
RKLQVTWCQFSVAEQLLRPLQRHCYAINYTDHNFSNF*

Sequence

>CNT0000288
AAGAAAACTCCAAGTCACATGGTGCCAATTTAGCGTTGCAGAGCAATTACTACGACCACTGCAACGTCACTGTTATGCAATAAATTATACAGACCATAAC
TTTTCAAATTTCTAAGGCTACCAAAGCAGTCAGATAATAAAGTTTCTACTTGCCATCTTCATCTTTGCTGCCGAATCCAAATGGAACTTCCAAACATAGA
TCACATGCAGCTTTTTAACCTCACCCCCACGTCAGATATATATATATATTCCAAAGGTAAATGAAAAAAGAAAATTATTTTGGAACATGACCGTACGTTG
GTTTAATTGATTCATCAGATCGAGAGCGGAAGACAATTAATTAACAACGGAAAAAGAGTGATTTGATTAGATTAATTAATTAGACTTAGATTTCGTTACT
GACCATTGTTTTGTTGGTCTGAATCAAAGAGTTCTTGCAATGCGCGATAGCTCCTTGGATTGCACTCTGCAAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G00670.1 Uncharacterized protein protein coding CNT0000288 1290 473 CDS_UTR Cis