Detailed information on CNT0000292 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0040890, E-value = 9e-11 (A. thaliana)

Expression of CNT0000292

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000.2332.4850.2710.3400.251.3911.1131.6940.52900.7790.315leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (58 aa)
QQRFQVLCKVKNITESNPLSLSPALATASHDKDCYSIPFLPSSIVSKVKNSFHRKVQM*

>peptide 2 (30 aa)
TKIPSPLQSQEYYRIKSVKLVPCSSNSITR*

Sequence

>CNT0000292
CAACAAAGATTCCAAGTCCTTTGCAAAGTCAAGAATATTACAGAATCAAATCCGTTAAGCTTGTCCCCTGCTCTAGCAACAGCATCACACGATAAGGATT
GCTACTCAATTCCCTTCCTGCCCTCAAGCATAGTCTCGAAGGTGAAGAACAGCTTCCACAGGAAAGTGCAAATGTAACCAAGGGCTCTGACCATTCCAAG
CCAAATATGCTTCGCAATTTCATCTCGTCATGTTTTGCAGCTTTTGGGCAGGTCTGTCGCAGGAAGCAAAGATGAAAATCAAGAGATGAATTGTAATCTA
CAAAGCATGACAAGGACTTCTGAAAAATAGAAAAACTTTTTACACCTCTGAAAGCATAGGCAGGAGAGTAGATTATGCACTTACAAACATCAGGTGATAA
GGAAGTCTCAAGATGAAGTGCTCTATTGTAATTGCATTGAGCTGCAGGCCCCCCACTTCTATTGTTGCCTGCACAAGCATTGCCAAGTTTTAGTTAACTT
GAATGTTTATCTAAAGTTTCATC

lncRNA-RNA interactions

Number of interactions: 27

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G39120.10 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA01G39120.11 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA01G39120.12 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA01G39120.13 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA01G39120.14 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA01G39120.15 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA01G39120.2 Uncharacterized protein protein coding CNT0000292 848 396 CDS Trans
GLYMA01G39120.3 Uncharacterized protein protein coding CNT0000292 848 396 CDS Trans
GLYMA01G39120.4 Uncharacterized protein protein coding CNT0000292 848 396 CDS Trans
GLYMA01G39120.5 Uncharacterized protein protein coding CNT0000292 848 396 CDS Trans
GLYMA01G39120.6 Uncharacterized protein protein coding CNT0000292 848 396 CDS Trans
GLYMA01G39120.7 Uncharacterized protein protein coding CNT0000292 848 396 CDS Trans
GLYMA01G39120.8 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA01G39120.9 Uncharacterized protein protein coding CNT0000292 848 396 CDS_UTR Trans
GLYMA05G10673.1 Uncharacterized protein protein coding CNT0000292 196 128 CDS Trans
GLYMA05G10673.2 Uncharacterized protein protein coding CNT0000292 196 128 CDS Trans
GLYMA05G10673.3 Uncharacterized protein protein coding CNT0000292 196 128 CDS Trans
GLYMA05G10673.4 Uncharacterized protein protein coding CNT0000292 196 128 CDS Trans
GLYMA11G06130.2 Uncharacterized protein protein coding CNT0000292 1081 388 CDS Cis
GLYMA11G06130.3 Uncharacterized protein protein coding CNT0000292 1081 388 CDS Cis
GLYMA11G06130.4 Uncharacterized protein protein coding CNT0000292 1081 388 CDS Cis
GLYMA17G20320.2 Uncharacterized protein protein coding CNT0000292 227 128 CDS Trans
GLYMA17G20320.2 Uncharacterized protein protein coding CNT0000292 269 158 CDS Trans
GLYMA17G20320.3 Uncharacterized protein protein coding CNT0000292 227 128 CDS Trans
GLYMA17G20320.3 Uncharacterized protein protein coding CNT0000292 269 158 CDS Trans
GLYMA17G20320.4 Uncharacterized protein protein coding CNT0000292 227 128 CDS Trans
GLYMA17G20320.4 Uncharacterized protein protein coding CNT0000292 269 158 CDS Trans