Detailed information on CNT0000294 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|C0LGH3|Y5614_ARATH, E-value = 4e-56

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000294

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.1672.5732.77200.0830.2080.2440.4570000000.096leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPITFFTSSGSYLLGFKVLSTNSKCLPLSYNVHDCCSQNQGSYSKML*

>peptide 2 (43 aa)
MRLVPWKQLRQSKISNFRLKFFIQENISTLDISMYDRNMKFLM*

>peptide 3 (31 aa)
MECILRCCVSPDKCIRFMRLLCMWIPIYLTL*

>peptide 4 (49 aa)
MSMTVVVKIKVHIVRCYKKTNNNWYIYMGSSLLVEEGNHPQYHHQQHSH*

Sequence

>CNT0000294
CTTCTTTTGCCTTTTTTTTAAAAAAAAAAAAAAACTCAAGCACTCCATAAAGCACTAATAAACAAAATCTTAGGAATGCCAATGTAATCTTCTCTTCAAA
ATAAGATTTTTTACCAATAATTATTCCCATCTTTAATAATGAACTAGACAAAAAATTTATTTCACATCATGTACTTAATCATTGAGCAGGTACAACAGAA
TTGGAGGTAGTAGCATTAGTGGTCGAGGAACCAGTTGAGGCAGATATGATAGATCTTTAAGGGGCCCTTAAATTTGACTCAAAAAAGATAGGCATCGAAG
GTCTCATATGCTCAAGTAAGTCATTGCTACTGAGTTGGACTACTACTTCAGACATGGCTGGCCGCATTGCAGGCGATGCTTGAGTGCACAACAAAGCAAT
GCCTATCACTTTCTTCACTTCTTCTGGATCATACTTATTAGGGTTTAAGGTTTTGTCCACTAACTCCAAGTGCTTGCCACTCTCATACAATGTCCATGAC
TGTTGTAGTCAAAATCAAGGTTCATATAGTAAGATGTTATAAGAAAACAAACAATAATTGGTACATATATATGGGAAGTTCCTTACTTGTCGAAGAAGGT
AATCATCCTCAATATCATCATCAACAACATTCACATTAGTACTCTTTCGACCACTTATGATTTCTAGAACTACAATTCCATAGCTGTATGTATCAGCCTT
TTCTGATAATTGACCATGGAGTGCATACTCAGGTGCTGTGTATCCCCTGACAAATGCATAAGATTTATGAGACTACTCTGCATGTGGATACCAATATATT
TGACTCTTTAAAATTTTCAAGTTGAGTTATTGGTATTATATTTTGACTCACAATGTCCCAGCAAATCTTGTGCTAAGATGAGATTGGTCCCCTGGAAGCA
GCTTCGCCAATCCAAAATCAGCAATTTTAGGCTGAAGTTCTTCATCCAAGAGAATATTTCCACTCTTGATATCTCTATGTATGACAGAAACATGAAATTC
CTCATGTAGATAGGCCAATCCCCTAGCCGTGCCCAAAATTATATCATACCGTTGTCTCCAGTTGAGTGAACCTTTTCTTTTACCTATTTCCCATGTGTAT
ATGTTCAAAACTTCAGAGGTAAAAACAGAGCTAAATAAAGGATAACTCACAAAATGCTTCCATTGGAAATTAACTAGTTACCAAATAAGAATTTGTCAAG
GCTGTTGTTTGCCATGTATTCGTAAACAAGAATTCTTTCTTGGCCTTTACTACAACAACCAAGAAGTCGAACCAGATTTTTGTGATGAACATTACTTATA
AGCGTTACTTCACTCTCAAATTCATCATCGATCTTGCTGGATTTTCCTGAAAGTAACTTTTTTACTGCAACATCTTTCCCATTTTTCATTGTCCCCTATT
GTATAACATCATCATTAAAAATTCTGCTTGAAACTTAGTTTTCTATCACTAGATGTGTAGCATATAAGTAATATTGCCTTCTTAGCTTATGGAGATATCT
TCGTTGACAACTTCACATTAAAAACAGAACTCTTAGAGTCACGATTGAAATGTGAGGAGGAACAACTCAAGTTTACCTTGTATACAGCACCAAAGCCTCC
TTCTCCTAGCTTATTTTTCTCACTAAAATTTTTTGTTGCAGCTTTCAAGTCACTATACTTGTACTTTGTTACAGCTTTCAACTCAGTTGCTCCCAATGTG
TAAGCTGCTAAGCA

lncRNA-RNA interactions

Number of interactions: 59

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G40350.1 Serine/threonine-protein kinase protein coding CNT0000294 87 100 CDS Trans
GLYMA11G32070.2 Uncharacterized protein protein coding CNT0000294 996 827 CDS Trans
GLYMA11G32070.2 Uncharacterized protein protein coding CNT0000294 930 591 CDS_UTR Trans
GLYMA11G32080.2 Uncharacterized protein protein coding CNT0000294 279 155 CDS Trans
GLYMA11G32080.2 Uncharacterized protein protein coding CNT0000294 924 602 CDS Trans
GLYMA11G32080.2 Uncharacterized protein protein coding CNT0000294 830 564 CDS Trans
GLYMA11G32090.2 Uncharacterized protein protein coding CNT0000294 314 154 CDS Trans
GLYMA11G32090.2 Uncharacterized protein protein coding CNT0000294 771 632 CDS Trans
GLYMA11G32090.2 Uncharacterized protein protein coding CNT0000294 895 587 CDS_UTR Trans
GLYMA11G32156.1 Uncharacterized protein protein coding CNT0000294 300 156 CDS Trans
GLYMA11G32156.1 Uncharacterized protein protein coding CNT0000294 482 291 CDS Trans
GLYMA11G32156.1 Uncharacterized protein protein coding CNT0000294 984 494 CDS Trans
GLYMA11G32178.1 Uncharacterized protein protein coding CNT0000294 725 636 CDS Trans
GLYMA11G32178.1 Uncharacterized protein protein coding CNT0000294 805 574 CDS_UTR Trans
GLYMA11G32228.1 Uncharacterized protein protein coding CNT0000294 378 170 CDS Trans
GLYMA11G32228.1 Uncharacterized protein protein coding CNT0000294 925 636 CDS Trans
GLYMA11G32228.1 Uncharacterized protein protein coding CNT0000294 880 482 CDS Trans
GLYMA11G32301.1 Uncharacterized protein protein coding CNT0000294 1007 726 CDS_UTR Trans
GLYMA11G32301.1 Uncharacterized protein protein coding CNT0000294 794 560 CDS Trans
GLYMA11G32301.2 Uncharacterized protein protein coding CNT0000294 794 560 CDS Trans
GLYMA11G32301.2 Uncharacterized protein protein coding CNT0000294 1007 726 CDS_UTR Trans
GLYMA11G32301.3 Uncharacterized protein protein coding CNT0000294 1007 726 CDS_UTR Trans
GLYMA11G32301.3 Uncharacterized protein protein coding CNT0000294 794 560 CDS Trans
GLYMA11G32301.4 Uncharacterized protein protein coding CNT0000294 1007 726 CDS_UTR Trans
GLYMA11G32301.4 Uncharacterized protein protein coding CNT0000294 794 560 CDS Trans
GLYMA11G32315.1 Uncharacterized protein protein coding CNT0000294 4476 1645 CDS_UTR Cis
GLYMA11G32360.2 Uncharacterized protein protein coding CNT0000294 492 187 CDS Trans
GLYMA11G32360.2 Uncharacterized protein protein coding CNT0000294 3085 1361 CDS_UTR Trans
GLYMA11G32360.3 Uncharacterized protein protein coding CNT0000294 492 187 CDS Trans
GLYMA11G32360.3 Uncharacterized protein protein coding CNT0000294 3085 1361 CDS_UTR Trans
GLYMA11G32390.2 Uncharacterized protein protein coding CNT0000294 283 189 CDS Trans
GLYMA11G32390.2 Uncharacterized protein protein coding CNT0000294 795 560 CDS Trans
GLYMA11G32390.2 Uncharacterized protein protein coding CNT0000294 1071 645 CDS_UTR Trans
GLYMA11G32390.3 Uncharacterized protein protein coding CNT0000294 283 189 CDS Trans
GLYMA11G32390.3 Uncharacterized protein protein coding CNT0000294 795 560 CDS Trans
GLYMA11G32390.3 Uncharacterized protein protein coding CNT0000294 1071 645 CDS_UTR Trans
GLYMA11G32390.4 Uncharacterized protein protein coding CNT0000294 283 189 CDS Trans
GLYMA11G32390.4 Uncharacterized protein protein coding CNT0000294 795 560 CDS Trans
GLYMA11G32390.4 Uncharacterized protein protein coding CNT0000294 1071 645 CDS_UTR Trans
GLYMA11G32500.1 Uncharacterized protein protein coding CNT0000294 1678 957 CDS Trans
GLYMA11G32500.1 Uncharacterized protein protein coding CNT0000294 1084 719 CDS_UTR Trans
GLYMA11G32520.1 Uncharacterized protein protein coding CNT0000294 328 274 CDS Trans
GLYMA11G32520.2 Uncharacterized protein protein coding CNT0000294 328 274 CDS Trans
GLYMA11G32590.2 Uncharacterized protein protein coding CNT0000294 1605 955 CDS Trans
GLYMA11G32590.2 Uncharacterized protein protein coding CNT0000294 1265 719 CDS_UTR Trans
GLYMA11G32590.3 Uncharacterized protein protein coding CNT0000294 1605 955 CDS Trans
GLYMA11G32590.3 Uncharacterized protein protein coding CNT0000294 1265 719 CDS_UTR Trans
GLYMA11G32600.1 Uncharacterized protein protein coding CNT0000294 256 160 CDS Trans
GLYMA11G32600.1 Uncharacterized protein protein coding CNT0000294 550 563 CDS Trans
GLYMA18G05240.2 Uncharacterized protein protein coding CNT0000294 248 159 CDS Trans
GLYMA18G05240.2 Uncharacterized protein protein coding CNT0000294 490 563 CDS Trans
GLYMA18G05240.2 Uncharacterized protein protein coding CNT0000294 312 449 CDS Trans
GLYMA18G05260.1 Uncharacterized protein protein coding CNT0000294 246 159 CDS Trans
GLYMA18G05260.1 Uncharacterized protein protein coding CNT0000294 588 554 CDS Trans
GLYMA18G05260.1 Uncharacterized protein protein coding CNT0000294 340 475 CDS Trans
GLYMA18G05291.1 Uncharacterized protein protein coding CNT0000294 93 64 CDS Trans
GLYMA18G05305.1 Uncharacterized protein protein coding CNT0000294 303 187 CDS Trans
GLYMA18G05305.1 Uncharacterized protein protein coding CNT0000294 721 608 CDS Trans
GLYMA18G05305.1 Uncharacterized protein protein coding CNT0000294 935 477 CDS Trans