Detailed information on CNT0000302 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000302

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQQSLININFQIGFLPELGKLNANRSTGASKHPNSSMTRRE

Sequence

>CNT0000302
TGGTGATTCTCAACAGATTTGTTTAGTCATCTTTCACTTCCTGTAAATGTTGCACAAAAAAATCAAACCGACATTCAAGACAACATGCAACAGAGCCTCA
TCAACATAAACTTCCAAATTGGCTTTTTACCTGAACTTGGGAAACTAAATGCCAATCGGTCCACCGGTGCCAGCAAACATCCCAATAGTTCCATGACCAG
AAGAGAACC

lncRNA-RNA interactions

Number of interactions: 21

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA09G35980.3 Uncharacterized protein protein coding CNT0000302 229 134 CDS_UTR Trans
GLYMA09G35980.3 Uncharacterized protein protein coding CNT0000302 86 44 UTR3 Trans
GLYMA09G35980.4 Uncharacterized protein protein coding CNT0000302 229 134 CDS_UTR Trans
GLYMA09G35980.4 Uncharacterized protein protein coding CNT0000302 86 44 UTR3 Trans
GLYMA09G35980.5 Uncharacterized protein protein coding CNT0000302 229 134 CDS_UTR Trans
GLYMA09G35980.5 Uncharacterized protein protein coding CNT0000302 86 44 UTR3 Trans
GLYMA09G35980.6 Uncharacterized protein protein coding CNT0000302 229 134 CDS_UTR Trans
GLYMA09G35980.6 Uncharacterized protein protein coding CNT0000302 86 44 UTR3 Trans
GLYMA09G35990.3 Uncharacterized protein protein coding CNT0000302 243 111 CDS_UTR Trans
GLYMA09G35990.3 Uncharacterized protein protein coding CNT0000302 119 62 UTR3 Trans
GLYMA09G35990.4 Uncharacterized protein protein coding CNT0000302 243 111 CDS_UTR Trans
GLYMA09G35990.4 Uncharacterized protein protein coding CNT0000302 119 62 UTR3 Trans
GLYMA09G35990.5 Uncharacterized protein protein coding CNT0000302 243 111 CDS_UTR Trans
GLYMA09G35990.5 Uncharacterized protein protein coding CNT0000302 119 62 UTR3 Trans
GLYMA09G35990.6 Uncharacterized protein protein coding CNT0000302 243 111 CDS_UTR Trans
GLYMA09G35990.6 Uncharacterized protein protein coding CNT0000302 119 62 UTR3 Trans
GLYMA12G01340.3 Uncharacterized protein protein coding CNT0000302 588 209 CDS_UTR Cis
GLYMA12G01350.1 Uncharacterized protein protein coding CNT0000302 240 132 CDS_UTR Trans
GLYMA12G01350.2 Uncharacterized protein protein coding CNT0000302 240 132 CDS_UTR Trans
GLYMA12G01350.3 Uncharacterized protein protein coding CNT0000302 240 132 CDS_UTR Trans
GLYMA12G01350.4 Uncharacterized protein protein coding CNT0000302 240 132 CDS_UTR Trans