Detailed information on CNT0000307 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0000307

Peptides detected in this lncRNA

>peptide 1 (52 aa)
ISLWSMPHSAANSPESLISSFFSRYPRIASSAIASPHSTVEDTAFRNNFGIR*

>peptide 2 (88 aa)
MASAVRLASRSFFANRSRSFVKSSTTPFVFSSSSASRISRASRVLSVVISVESLMPLHSAIANARLTSNIAFDSTCWSSLSRGLKKTL*

>peptide 3 (39 aa)
MLGSPPISPSIPPAGARFLEDLKKHCDRPAGSIQDERKN*

>peptide 4 (57 aa)
MMFRVYLLEIKECIYSLFFVGSLLKRHILSAFPSLYVWYVNGIMALYSTIDLAHNGK*

>peptide 5 (29 aa)
MTNMLPIALSQNLLEWINNKMSASLRMLK*

Sequence

>CNT0000307
ATCTCGTTGTGGTCAATGCCGCATTCAGCTGCGAATTCACCCGAGTCTTTAATCTCATCGTTCTTCTCTAGGTATCCCAGAATTGCTTCTTCCGCCATTG
CTTCGCCGCACAGCACAGTAGAAGACACAGCGTTTAGAAACAACTTCGGAATAAGATAGATACTAGATAGGTTCGCTAATATTGGGCCACATAACTTGGG
TTGGGCCGGCCCAATAACAAAAGAAGAGTTAGTTAGTGAGTTTTGTAGTGTAGGGTTTTAGTACTACCAAGTTTAGCGAGAGCGGGGGTTCAAGCATAAT
GGCTTCCGCGGTGAGGTTGGCTTCAAGGTCCTTCTTCGCTAATCGTTCTAGAAGCTTCGTCAAGAGCTCAACGACGCCGTTTGTCTTCTCTTCGTCTTCC
GCATCACGCATCTCTCGTGCTTCGAGGGTTCTGTCGGTTGTGATAAGCGTTGAGTCGTTGATGCCTCTTCACAGTGCTATTGCTAATGCTAGGCTCACCT
CCAATATCGCCTTCGATTCCACCTGCTGGAGCTCGCTTTCTCGAGGACTTAAAAAAACATTGTGACAGGCCTGCTGGATCCATTCAAGATGAAAGAAAAA
ATTAAAAAGAAAGAATCATAACTTTTCTTTTGTCTCGCCCTAGGATGGGAAAAGATCATCAAACATTTAAATTGTGGTCAGTTGTACTCTGATTCCCTCC
AACTGCAGACTTGTATAATTGGATTTCCTCATTGCCTGAAAATAGATGACCAACATGCTCCCAATTGCTCTTTCTCAAAATCTTCTTGAATGGATTAACA
ATAAGATGTCAGCTTCCTTAAGGATGTTAAAATGATGTTTCGGGTATATCTGTTAGAGATCAAAGAGTGTATTTACTCCCTATTTTTCGTTGGGTCCTTG
TTAAAGCGTCATATTCTGTCCGCTTTCCCCTCTCTTTATGTATGGTACGTTAATGGTATAATGGCATTGTATTCAACCATCGATTTAGCCCACAATGGGA
AGTGAAACTAATTTGAGAACGGAAAATTGTCATGTAATTGGTCTCGGACTGCTAATATTTAATTATAATATATCGT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA12G04730.2 Uncharacterized protein protein coding CNT0000307 1208 411 CDS Cis