Detailed information on CNT0000322 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LPF0|TAF2_ARATH, E-value = 2e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000322

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.3140.084000.1000.1840.9230.1640.3570.4870.92600.116leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.850.90.951

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKHSSSPTYPQSLYSQLKTKILHHTIFHHVMNL*

>peptide 2 (42 aa)
MLRPFNGLVSHFLNLNEWKMVIDLHTSGGNPALTKSYFVGPM*

>peptide 3 (34 aa)
GYLRPFTMVLNHLISQCRNIAIYLQRRFLNHRKS*

>peptide 4 (64 aa)
MHDRLTFTDQINQERKTNIVSPVPCLIISQMFLNKKIYQETSKSIQEPLRKLQSIHRIYQPNTF*

Sequence

>CNT0000322
CGGTTATTTAAGACCTTTTACGATGGTTTTGAACCATCTTATAAGCCAGTGTCGTAATATCGCAATATACTTACAACGACGGTTTTTGAACCATCGTAAA
AGCTAACGTTTTCTAAGACGATTATTAAATAATCATCTTAGAATGTAGTAGATACAAAGGCGGTCCACGTATTAAACCCGACATAATTTGTTGTAGTCAA
CATGCGAATTCTAATACGGTTCTAAAAGAACCATCGTAGTATGTCTTAGAAACTAAGACGGTTATCAAAATAACCATCTTAGAATAGTGTTTTTGCTATT
GAATTTCTACGACAGTCATTTTCACGACCGCCTTAGTTTCGAAGACATACTACGAAGATTCTTTTAGAACCCTCTTAGATAGTTTTTTCTGGTAACTGCT
ACCCCCACCGCTTCCAGTTCTCCATTTCCACTGTAGCATTGCAGCAACAACATTTTTATACAGCAATAAATAGAACAAGTTTGTAATTTCTTTACAGGCT
AATGCATGATAGGTTAACCTTCACAGATCAAATAAACCAAGAAAGGAAAACAAACATTGTATCTCCTGTACCGTGCCTCATTATTTCCCAAATGTTTCTT
AATAAAAAAATCTATCAAGAAACCAGCAAGTCCATCCAAGAGCCACTCCGCAAATTGCAAAGCATTCACCGAATTTATCAGCCTAACACTTTTTAGAATA
AAAAAAGATTCAATTAACCCATACACTAAATGCAGTATTTTTCAGAATGAAACATTCAAGCAGCCCAACATATCCCCAATCCCTTTATTCACAGTTAAAA
ACAAAAATACTACATCATACAATATTCCACCACGTCATGAACCTATGATAATCTAGTAAAAAAAAATTGCAGCCATTACCCCCCTTCTTTCTTTTAACTC
TATCGATCCTTTATAAATTAAGTTCAAATTTAATTCTCGTTAACAATAACCAATTAATTTTGATGAATAATATGTTATTGTTGGTACTACCGAAAACTTT
TACCAAGCCATGCATGTTACATGCTCAGACCTTTTAATGGGCTAGTCTCTCATTTTCTTAATTTAAATGAATGGAAGATGGTAATTGATTTGCACACTAG
TGGGGGAAATCCAGCTTTAACTAAAAGTTATTTTGTGGGACCAATGTGAAGGTCTTTGTTAAATAGTTAATAATGCAAGGTTCAAAATAAAAGCACTTAA
GCACAGCCCTTAACAAATTAACACCCCTTAAAAAACAACGTTGTTTTGGATCCCCTGTAGCATCTCTAAGGTGTAACTTAGCACTACGTGAACAAGCTGA
CAACATTTTGTGATTGAATTTTAACATTCATTAATTAACGTCATGGATAAAATTAAAGATTGTAGTTCTATAGATAAATAATAAAAAAAAAGTAAATGCT
TACTTTTGTTTATAAAAAT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G07926.1 Uncharacterized protein protein coding CNT0000322 352 242 CDS Trans
GLYMA17G13080.1 Uncharacterized protein protein coding CNT0000322 467 245 CDS Trans