Detailed information on CNT0000328 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000328

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00.7750.39602.30400.6791.2740.4731.7031.6470.8990.7770.6630leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.6

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MWIFALKGRHGTNSLSLVVTHSHLYTSLGLPVFGYKQTSIISSAT*

>peptide 2 (34 aa)
MTYEVILSDNCCLLKTQCSTLAQPDEKKACERGG*

Sequence

>CNT0000328
TGGGGAGGTAAACTCACATAGAACAGACCATAAAAGCAGAATGAACAAGATATTCAGCACAATATCATATATATGATCACAATTTCTTATTAAAATTGAA
TCCAAAGTTTGAATTTACTATTATTTGCTTTAGCAACTTCTAAACCCTGCTTTTATAAGTTAATCACTGGGATACAGTAGCATTAGTACCAGACCCTGTA
ACACAATCAGCATAGAAAAGCATTGGGAAAGTTAGAAGAGGAACTACTGAAATACATTATGTGGATATTTGCACTGAAGGGAAGACATGGGACTAATTCA
TTGTCACTGGTAGTAACACATTCTCACTTGTACACAAGTCTAGGGTTACCAGTCTTTGGCTATAAACAAACTTCCATCATATCTTCTGCCACTTGAGTTC
TATTGTAGCCTTTGACTACCTTAGTTGAGTCAAGTCTACTTACTGGTCATGACTTATGAGGTTATCTTATCTGACAACTGTTGTCTTCTAAAAACACAAT
GTTCAACATTAGCACAACCTGATGAGAAAAAGGCATGTGAAAGGGGAGGATAACATTACCTAGATCAACATCAACTATAGTCCTCCTACGAACTCTTCTT
GAATTGTTTTTAGCC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G11050.1 Uncharacterized protein protein coding CNT0000328 573 305 CDS Trans
GLYMA12G03250.1 Uncharacterized protein protein coding CNT0000328 844 306 CDS Cis
GLYMA12G03250.2 Uncharacterized protein protein coding CNT0000328 844 306 CDS Cis