Detailed information on CNT0000331 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SGE0|AXS2_ARATH, E-value = 3e-50

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004404, E-value = 2e-30 (V. vinifera)

Expression of CNT0000331

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVKLKSEETYQAACLLWSCQGFSCHYHHIPHHKILLSSHQR*

>peptide 2 (32 aa)
MSPTDSKLMQNAKPQLRMHRSGNTLKKETGQE*

>peptide 3 (61 aa)
MVFKKQTVPKIKIDIRTYNHQQDSFNSIFNVNKGSLGLATVHKLEGLSSEKILQTKENRKF*

>peptide 4 (31 aa)
MSCADMSEWTQAGPKVKSWDSILREAMTINR*

>peptide 5 (42 aa)
MPDPNTNCKQTTHISSIPSEERNNKQPTNPCSQYKTRKKKFQ*

>peptide 6 (167 aa)
MPGMKSIRGPIQLKGLTIVNSKPFSAPSAANNHTSVRINKIEKEKKKQHLNKNKSKLTINQPLNQLFRTGIRPPLFFNRTKNARRLVFFKNIVCRILTQI
ANKQHISAQSHQKKETTNNQPTLAPNTKPEKKNSNKECNHNLNPTPNSSKEQNHNTSTSSNKQSKRK*

>peptide 7 (31 aa)
MAEHLGKTRTPFSKVAHHHHCKKLNLQRVLQ*

Sequence

>CNT0000331
GGTCAAACAGAATGATAGAATGATACAACTTACAGCTGACCTGGAAAGACAACAAAGCAATGAATCGAGAGATCCTTAAAAACACAGAAAAAAGTCTTCC
CTAGGTAATATATAAAGTGTCTCAACATGTTTAGCAGCGCATGGTCTCTACATTAAAATTACATAGAGCACAGATTGCCCTTGTATAAATTCCTACTTCT
CCATGTGGGGGCTATATTGCCTACAGGCTAACGAAACCAATAGGAGGAAAATTTACGATTTTATATAAAATCAACCAGTATAATATGGCAGAACACTTGG
GCAAGACAAGAACACCCTTCTCAAAGGTAGCACATCACCATCACTGTAAAAAGCTTAACTTGCAACGGGTTTTGCAATGACTTTCTTAACGGCTTCAGCA
TATGTCCTGTGCTGATATGTCAGAGTGGACTCAAGCAGGTCCCAAAGTGAAGTCTTGGGATTCCATCCTGAGAGAAGCAATGACCATTAACAGGTAAATT
AAGTTACAATCTTAAAAGGGTCAAATATGGTTAAATTAAAGAGTGAGGAAACCTACCAAGCTGCCTGTTTATTATGGTCATGTCAGGGATTCTCTTGTCA
CTATCATCATATCCCTCACCATAAAATTCTTTTGAGCTCACATCAACGGTAGGTGTTTCAGGAGTTTGTTCGCCACTTACCTTTGAATAAACCTGTATAT
AGAATGGAATGGAATAACAATTGATTCATGAATTCCCAAAACAACATGCCAAAATTCTAACAGTAGAGTCAAATAATAAAAAGAAACTTGATCATTTCAC
CTTAATCATTATTTCAGCAAGCTGCCTAACAGTAACCTCATTGTTTGGGTTACCCACATTAAATATGTGGCCATTGGCCCTGGCAGGGTTTTCCTGTTAA
CAGGTCATAACACTCAGTGGACCAGCCAACAATAATTTGACTTGAAAAAAAAATCACATGGACCTGTATGGTATTTAAAAAACAAACAGTCCCAAAAATA
AAGATAGACATTAGAACGTACAATCATCAGCAAGACAGCTTCAATAGCATCTTTAATGTAAACAAAGGTTCTCTGGGACTGGCCACCGTCCACAAGCTTG
AGGGGCTCTCCTCTGAGAAGATTCTGCAGACAAAGGAAAACAGAAAATTTTGAACAAATTTTCAAAACTCTGGCTAAAATCATCTAAAAACTTCAACATA
GCAAAAGTAAGTAACTGACATTGCTAAAGCATGCAAGAACCCGAGGAACACCCTCACTTGGACCATCAATGCCAGGAATGAAATCCATTCGAGGTCCAAT
CCAGTTAAAAGGCCTCACAATTGTGAACTCCAAGCCATTTTCAGCACCCTCAGCTGCCAATAATCACACATCAGTGAGAATTAACAAAATTGAAAAAGAA
AAAAAAAAACAACACCTAAACAAAAACAAATCAAAACTCACCATAAATCAGCCTCTCAATCAACTGTTTCGCACAGGCATAAGACCACCTCTGTTTTTCA
ATAGAACCAAAAATGCAAGGAGACTCGTCTTCTTTAAGAACATAGTATGCCGGATCCTAACACAAATTGCAAACAAACAACACATATCAGCTCAATCCCA
TCAGAAGAAAGAAACAACAAACAACCAACCAACCCTTGCTCCCAATACAAAACCAGAAAAAAAAAATTCCAATAAGGAATGCAACCACAACCTAAATCCA
ACTCCAAATTCATCAAAAGAACAAAATCACAACACGTCAACCTCCTCTAACAAACAATCCAAACGCAAGTGAAAATGTCCAAAGTCGACATCGTATAATA
ACAAGGCAATCATTAATCACAACCTAAATCCAATTAGCCACATCATGTCACCGACAGATTCCAAATTAATGCAAAACGCAAAACCACAGCTCAGAATGCA
CAGATCTGGAAACACTCTTAAAAAAGAAACGGGTCAAGAATAAAATTCAAAAAGGCCACCTTACGAAGAGGACTATCTTTAGGGAGAAAGGCTCCAATCG
TCTTTCCGTACACTTCGCAAGTAGAGAAATGGATAAGGCGCTTGTTGTTCTCGGAACAGTATTTCACC

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G19550.1 Uncharacterized protein protein coding CNT0000331 2654 1473 CDS_UTR Trans
GLYMA11G19550.1 Uncharacterized protein protein coding CNT0000331 392 230 CDS Trans
GLYMA11G19550.2 Uncharacterized protein protein coding CNT0000331 2654 1473 CDS_UTR Trans
GLYMA11G19550.2 Uncharacterized protein protein coding CNT0000331 392 230 CDS Trans
GLYMA12G27175.1 Uncharacterized protein protein coding CNT0000331 452 357 CDS_UTR Trans
GLYMA12G30490.1 Uncharacterized protein protein coding CNT0000331 273 140 CDS Trans
GLYMA12G30490.1 Uncharacterized protein protein coding CNT0000331 506 372 CDS Trans
GLYMA12G30490.2 Uncharacterized protein protein coding CNT0000331 273 140 CDS Trans
GLYMA12G30490.2 Uncharacterized protein protein coding CNT0000331 506 372 CDS Trans
GLYMA17G05440.1 Uncharacterized protein protein coding CNT0000331 385 349 CDS_UTR Trans
GLYMA17G05440.1 Uncharacterized protein protein coding CNT0000331 471 350 CDS Trans